Tardbp (Dipodomys ordii)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSDORG00000007465 T36472_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
TARDBP
M074_0.6 		Homo sapiens GAAUGD RNAcompete
Ray et al.(2013)
RNCMPT00076 		0.909
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDORP00000007003 RRM 106 174
ENSDORP00000007003 RRM 193 244

Links

Other RRM family RBPs
Other Dipodomys ordii RBPs

55 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
TADBP_CHICK Gallus gallus ENSGALG00000002906 I 0.975
ENSOCUG00000004049 Oryctolagus cuniculus ENSOCUG00000004049 I 0.975
TARDBP Dasypus novemcinctus ENSDNOG00000008531 I 0.975
TARDBP Meleagris gallopavo ENSMGAG00000004637 I 0.975
TARDBP Tarsius syrichta ENSTSYG00000004077 I 0.967
LOC100014246 Monodelphis domestica ENSMODG00000011233 I 0.967
TARDBP Tursiops truncatus ENSTTRG00000001312 I 0.967
TARDBP Ornithorhynchus anatinus ENSOANG00000013320 I 0.967
TARDBP Erinaceus europaeus ENSEEUG00000003755 I 0.967
LOC100051482 Equus caballus ENSECAG00000008338 I 0.967
TARDBP Tupaia belangeri ENSTBEG00000000263 I 0.967
TARDBP Taeniopygia guttata ENSTGUG00000003255 I 0.967
TARDBP Vicugna pacos ENSVPAG00000009543 I 0.967
Ame_R011012 Ailuropoda melanoleuca Ame_R011012 I 0.967
TARDBP Echinops telfairi ENSETEG00000004358 I 0.967
ENSCAFG00000016759 Canis familiaris ENSCAFG00000016759 I 0.967
TARDBP Loxodonta africana ENSLAFG00000014421 I 0.967
TARDBP Macropus eugenii ENSMEUG00000006548 I 0.967
TARDBP Felis catus ENSFCAG00000000050 I 0.967
ENSACAG00000011709 Anolis carolinensis ENSACAG00000011709 I 0.959
TARDBP Procavia capensis ENSPCAG00000010442 I 0.959
Q2KJ45_BOVIN Bos taurus ENSBTAG00000003697 I 0.959
Tardbp Rattus norvegicus ENSRNOG00000012455 I 0.959
TARDBP Ochotona princeps ENSOPRG00000006352 I 0.959
Tardbp Mus musculus ENSMUSG00000041459 I 0.959
TARDBP Cavia porcellus ENSCPOG00000011619 I 0.942
TARDBP Myotis lucifugus ENSMLUG00000004263 I 0.934
tardbp Xenopus tropicalis ENSXETG00000006317 I 0.934
AAM33247 Xenopus laevis AAM33247 I 0.917
LOC100405373 Callithrix jacchus ENSCJAG00000002381 I 0.917
ENSPPYG00000001894 Pongo pygmaeus ENSPPYG00000001894 I 0.909
TARDBP Homo sapiens ENSG00000120948 D 0.909
ENSMMUG00000007456 Macaca mulatta ENSMMUG00000007456 I 0.909
XR_021519.1 Pan troglodytes ENSPTRG00000000136 I 0.909
tardbpl Danio rerio ENSDARG00000004452 I 0.893
AAH44271 Xenopus laevis AAH44271 I 0.876
TARDBP Oryzias latipes ENSORLG00000003593 I 0.868
TARDBP Gasterosteus aculeatus ENSGACG00000012164 I 0.860
TARDBP Takifugu rubripes ENSTRUG00000012070 I 0.852
TARDBP Oryzias latipes ENSORLG00000005188 I 0.851
TARDBP Tetraodon nigroviridis ENSTNIG00000015173 I 0.844
TARDBP Takifugu rubripes ENSTRUG00000012063 I 0.835
TARDBP Tetraodon nigroviridis ENSTNIG00000014758 I 0.835
TARDBP Gasterosteus aculeatus ENSGACG00000007124 I 0.828
tardbp Danio rerio ENSDARG00000040031 I 0.762
e_gw1.17.468.1 Lottia gigantea e_gw1.17.468.1 I 0.756
ENSMMUG00000003940 Macaca mulatta ENSMMUG00000003940 I 0.746
amel4_ncbi_hmm11035 Apis mellifera amel4_ncbi_hmm11035 I 0.746
nasonia_NCBI_hmm274594 Nasonia vitripennis nasonia_NCBI_hmm274594 I 0.738
TARDBP Pteropus vampyrus ENSPVAG00000014773 N 0.730
TARDBP Microcebus murinus ENSMICG00000003838 I 0.721
e_gw.96.287.1 Branchiostoma floridae e_gw.96.287.1 I 0.720
estExt_Genewise1Plus.C_8190002 Capitella teleta estExt_Genewise1Plus.C_8190002 I 0.718
TARDBP Otolemur garnettii ENSOGAG00000016721 I 0.713
PHUM575260 Pediculus humanus PHUM575260 I 0.703