XR_021519.1 (Pan troglodytes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSPTRG00000000136 T40622_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
TARDBP
M074_0.6 		Homo sapiens GAAUGD RNAcompete
Ray et al.(2013)
RNCMPT00076 		1.000
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSPTRP00000000267 RRM 106 174
ENSPTRP00000000267 RRM 193 244
ENSPTRP00000022700 RRM 106 174
ENSPTRP00000022700 RRM 193 244

Links

Other RRM family RBPs
Other Pan troglodytes RBPs

56 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
TARDBP Homo sapiens ENSG00000120948 D 1.000
ENSMMUG00000007456 Macaca mulatta ENSMMUG00000007456 I 1.000
ENSPPYG00000001894 Pongo pygmaeus ENSPPYG00000001894 I 1.000
LOC100405373 Callithrix jacchus ENSCJAG00000002381 I 0.975
TARDBP Cavia porcellus ENSCPOG00000011619 I 0.950
LOC100051482 Equus caballus ENSECAG00000008338 I 0.942
TARDBP Erinaceus europaeus ENSEEUG00000003755 I 0.942
TARDBP Ornithorhynchus anatinus ENSOANG00000013320 I 0.942
Ame_R011012 Ailuropoda melanoleuca Ame_R011012 I 0.942
ENSCAFG00000016759 Canis familiaris ENSCAFG00000016759 I 0.942
TARDBP Echinops telfairi ENSETEG00000004358 I 0.942
TARDBP Tupaia belangeri ENSTBEG00000000263 I 0.942
TARDBP Procavia capensis ENSPCAG00000010442 I 0.942
TARDBP Loxodonta africana ENSLAFG00000014421 I 0.942
TARDBP Macropus eugenii ENSMEUG00000006548 I 0.942
LOC100014246 Monodelphis domestica ENSMODG00000011233 I 0.942
TARDBP Tursiops truncatus ENSTTRG00000001312 I 0.942
TARDBP Vicugna pacos ENSVPAG00000009543 I 0.942
TARDBP Felis catus ENSFCAG00000000050 I 0.942
TARDBP Taeniopygia guttata ENSTGUG00000003255 I 0.934
TARDBP Dasypus novemcinctus ENSDNOG00000008531 I 0.934
ENSACAG00000011709 Anolis carolinensis ENSACAG00000011709 I 0.934
Q2KJ45_BOVIN Bos taurus ENSBTAG00000003697 I 0.934
ENSOCUG00000004049 Oryctolagus cuniculus ENSOCUG00000004049 I 0.934
TARDBP Ochotona princeps ENSOPRG00000006352 I 0.934
TARDBP Tarsius syrichta ENSTSYG00000004077 I 0.926
TADBP_CHICK Gallus gallus ENSGALG00000002906 I 0.926
TARDBP Meleagris gallopavo ENSMGAG00000004637 I 0.926
Tardbp Mus musculus ENSMUSG00000041459 I 0.917
Tardbp Rattus norvegicus ENSRNOG00000012455 I 0.917
Tardbp Dipodomys ordii ENSDORG00000007465 I 0.909
TARDBP Myotis lucifugus ENSMLUG00000004263 I 0.909
AAM33247 Xenopus laevis AAM33247 I 0.901
tardbp Xenopus tropicalis ENSXETG00000006317 I 0.901
TARDBP Oryzias latipes ENSORLG00000003593 I 0.876
tardbpl Danio rerio ENSDARG00000004452 I 0.876
TARDBP Gasterosteus aculeatus ENSGACG00000012164 I 0.868
AAH44271 Xenopus laevis AAH44271 I 0.868
TARDBP Gasterosteus aculeatus ENSGACG00000007124 I 0.844
TARDBP Takifugu rubripes ENSTRUG00000012063 I 0.843
TARDBP Oryzias latipes ENSORLG00000005188 I 0.843
TARDBP Tetraodon nigroviridis ENSTNIG00000014758 I 0.843
TARDBP Tetraodon nigroviridis ENSTNIG00000015173 I 0.836
TARDBP Takifugu rubripes ENSTRUG00000012070 I 0.828
amel4_ncbi_hmm11035 Apis mellifera amel4_ncbi_hmm11035 I 0.754
tardbp Danio rerio ENSDARG00000040031 I 0.754
nasonia_NCBI_hmm274594 Nasonia vitripennis nasonia_NCBI_hmm274594 I 0.746
e_gw1.17.468.1 Lottia gigantea e_gw1.17.468.1 I 0.732
ENSMMUG00000003940 Macaca mulatta ENSMMUG00000003940 I 0.721
e_gw.96.287.1 Branchiostoma floridae e_gw.96.287.1 I 0.720
GK15864 Drosophila willistoni FBgn0217867 I 0.713
estExt_Genewise1Plus.C_8190002 Capitella teleta estExt_Genewise1Plus.C_8190002 I 0.710
GG19989 Drosophila erecta FBgn0112189 I 0.705
GE11522 Drosophila yakuba FBgn0229324 I 0.705
PHUM575260 Pediculus humanus PHUM575260 I 0.703