tardbp (Xenopus tropicalis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSXETG00000006317 T42842_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
TARDBP
M074_0.6 		Homo sapiens GAAUGD RNAcompete
Ray et al.(2013)
RNCMPT00076 		0.901
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSXETP00000010789 RRM 107 175
ENSXETP00000010789 RRM 193 244
ENSXETP00000013850 RRM 107 175
ENSXETP00000013850 RRM 193 239

Links

Other RRM family RBPs
Other Xenopus tropicalis RBPs

54 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAM33247 Xenopus laevis AAM33247 I 0.967
AAH44271 Xenopus laevis AAH44271 I 0.957
Q2KJ45_BOVIN Bos taurus ENSBTAG00000003697 I 0.942
ENSACAG00000011709 Anolis carolinensis ENSACAG00000011709 I 0.942
TARDBP Taeniopygia guttata ENSTGUG00000003255 I 0.942
TARDBP Ochotona princeps ENSOPRG00000006352 I 0.942
TADBP_CHICK Gallus gallus ENSGALG00000002906 I 0.934
TARDBP Echinops telfairi ENSETEG00000004358 I 0.934
TARDBP Erinaceus europaeus ENSEEUG00000003755 I 0.934
LOC100051482 Equus caballus ENSECAG00000008338 I 0.934
Tardbp Mus musculus ENSMUSG00000041459 I 0.934
TARDBP Ornithorhynchus anatinus ENSOANG00000013320 I 0.934
LOC100014246 Monodelphis domestica ENSMODG00000011233 I 0.934
TARDBP Meleagris gallopavo ENSMGAG00000004637 I 0.934
TARDBP Macropus eugenii ENSMEUG00000006548 I 0.934
TARDBP Loxodonta africana ENSLAFG00000014421 I 0.934
Tardbp Dipodomys ordii ENSDORG00000007465 I 0.934
Ame_R011012 Ailuropoda melanoleuca Ame_R011012 I 0.934
TARDBP Tursiops truncatus ENSTTRG00000001312 I 0.934
Tardbp Rattus norvegicus ENSRNOG00000012455 I 0.934
ENSCAFG00000016759 Canis familiaris ENSCAFG00000016759 I 0.934
TARDBP Cavia porcellus ENSCPOG00000011619 I 0.934
TARDBP Vicugna pacos ENSVPAG00000009543 I 0.934
TARDBP Tupaia belangeri ENSTBEG00000000263 I 0.934
TARDBP Tarsius syrichta ENSTSYG00000004077 I 0.934
TARDBP Dasypus novemcinctus ENSDNOG00000008531 I 0.926
TARDBP Procavia capensis ENSPCAG00000010442 I 0.926
ENSOCUG00000004049 Oryctolagus cuniculus ENSOCUG00000004049 I 0.926
LOC100405373 Callithrix jacchus ENSCJAG00000002381 I 0.926
TARDBP Felis catus ENSFCAG00000000050 I 0.926
tardbpl Danio rerio ENSDARG00000004452 I 0.917
ENSMMUG00000007456 Macaca mulatta ENSMMUG00000007456 I 0.901
XR_021519.1 Pan troglodytes ENSPTRG00000000136 I 0.901
ENSPPYG00000001894 Pongo pygmaeus ENSPPYG00000001894 I 0.901
TARDBP Homo sapiens ENSG00000120948 D 0.901
TARDBP Myotis lucifugus ENSMLUG00000004263 I 0.901
TARDBP Oryzias latipes ENSORLG00000003593 I 0.893
TARDBP Oryzias latipes ENSORLG00000005188 I 0.893
TARDBP Gasterosteus aculeatus ENSGACG00000012164 I 0.884
TARDBP Takifugu rubripes ENSTRUG00000012070 I 0.869
TARDBP Tetraodon nigroviridis ENSTNIG00000014758 I 0.868
TARDBP Takifugu rubripes ENSTRUG00000012063 I 0.868
TARDBP Tetraodon nigroviridis ENSTNIG00000015173 I 0.861
TARDBP Gasterosteus aculeatus ENSGACG00000007124 I 0.844
tardbp Danio rerio ENSDARG00000040031 I 0.785
e_gw1.17.468.1 Lottia gigantea e_gw1.17.468.1 I 0.764
amel4_ncbi_hmm11035 Apis mellifera amel4_ncbi_hmm11035 I 0.754
nasonia_NCBI_hmm274594 Nasonia vitripennis nasonia_NCBI_hmm274594 I 0.746
ENSMMUG00000003940 Macaca mulatta ENSMMUG00000003940 I 0.737
e_gw.96.287.1 Branchiostoma floridae e_gw.96.287.1 I 0.736
estExt_Genewise1Plus.C_8190002 Capitella teleta estExt_Genewise1Plus.C_8190002 I 0.726
170286 Helobdella robusta 170286 I 0.718
PHUM575260 Pediculus humanus PHUM575260 I 0.703