CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Celf5
(
Dipodomys ordii
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSDORG00000005915
T36457_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
BRUNOL5
M157_0.6
Homo sapiens
UGUGUKK
RNAcompete
Ray et al.(2013)
RNCMPT00166
0.773
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSDORP00000005540
RRM
1
29
CAFLTYCARDSAIKAQTALHEQKTLPGMA
ENSDORP00000005540
RRM
49
115
LFVGMLNIQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPX
ENSDORP00000005540
RRM
314
384
LFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQTAIQAMNGFQIGMKRLK
Links
Other
RRM
family RBPs
Other
Dipodomys ordii
RBPs
26 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CELF5
Otolemur garnettii
ENSOGAG00000014161
I
0.994
CELF5
Tursiops truncatus
ENSTTRG00000009625
I
0.976
CELF5
Pteropus vampyrus
ENSPVAG00000014619
I
0.976
CELF5
Canis familiaris
ENSCAFG00000019263
I
0.971
CELF5
Echinops telfairi
ENSETEG00000016221
I
0.970
CELF5
Bos taurus
ENSBTAG00000021774
I
0.965
CELF5
Sus scrofa
ENSSSCG00000013476
I
0.959
CELF5
Procavia capensis
ENSPCAG00000002170
I
0.941
BRUNOL5
Taeniopygia guttata
ENSTGUG00000000514
I
0.935
CELF5
Meleagris gallopavo
ENSMGAG00000001169
I
0.935
celf4
Danio rerio
ENSDARG00000070045
I
0.835
CELF6
Cavia porcellus
ENSCPOG00000025842
I
0.818
CELF3
Microcebus murinus
ENSMICG00000010644
N
0.793
Ame_R011948
Ailuropoda melanoleuca
Ame_R011948
I
0.786
BRUNOL5
Homo sapiens
ENSG00000161082
D
0.781
CELF3
Takifugu rubripes
ENSTRUG00000012064
I
0.769
CELF5
Pan troglodytes
ENSPTRG00000010259
I
0.757
CELF3
Homo sapiens
ENSG00000159409
I
0.744
CELF5
Equus caballus
ENSECAG00000018055
N
0.737
CELF5
Myotis lucifugus
ENSMLUG00000006471
N
0.735
CELF5
Loxodonta africana
ENSLAFG00000026387
N
0.734
ACH69785
Xenopus laevis
ACH69785
I
0.724
CELF3
Macaca mulatta
ENSMMUG00000016952
I
0.720
celf5
Xenopus tropicalis
ENSXETG00000014344
I
0.714
CELF5
Oryzias latipes
ENSORLG00000004600
I
0.705
celf5
Danio rerio
ENSDARG00000071375
I
0.700