CELF5 (Oryzias latipes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSORLG00000004600 T40121_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
BRUNOL5
M157_0.6 		Homo sapiens UGUGUKK RNAcompete
Ray et al.(2013)
RNCMPT00166 		0.895
BRUNOL6
M178_0.6 		Homo sapiens UGUGDKG RNAcompete
Ray et al.(2013)
RNCMPT00187 		0.810
BRUNOL4
M004_0.6 		Homo sapiens KGUGUKK RNAcompete
Ray et al.(2013)
RNCMPT00004 		0.782
unc-75
M079_0.6 		Caenorhabditis elegans UGUUGUD RNAcompete
Ray et al.(2013)
RNCMPT00081 		0.739
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000005783 RRM 24 93
ENSORLP00000005783 RRM 112 180
ENSORLP00000005783 RRM 384 454

Links

Other RRM family RBPs
Other Oryzias latipes RBPs

94 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
celf5 Danio rerio ENSDARG00000071375 I 0.986
Ame_R011948 Ailuropoda melanoleuca Ame_R011948 I 0.895
BRUNOL5 Homo sapiens ENSG00000161082 D 0.895
celf4 Xenopus tropicalis ENSXETG00000020486 I 0.890
CELF4 Oryzias latipes ENSORLG00000008913 I 0.886
CELF4 Oryctolagus cuniculus ENSOCUG00000024790 I 0.886
CELF4 Loxodonta africana ENSLAFG00000021352 I 0.886
Celf4 Mus musculus ENSMUSG00000024268 I 0.881
ACH69785 Xenopus laevis ACH69785 I 0.876
CELF5 Pan troglodytes ENSPTRG00000010259 I 0.876
CELF4 Takifugu rubripes ENSTRUG00000015481 I 0.871
celf5 Xenopus tropicalis ENSXETG00000014344 I 0.867
CELF3 Tetraodon nigroviridis ENSTNIG00000008062 I 0.857
CELF6 Monodelphis domestica ENSMODG00000001784 I 0.857
CELF3 Gasterosteus aculeatus ENSGACG00000011707 I 0.852
AAH72134 Xenopus laevis AAH72134 I 0.848
AAA81375 Xenopus laevis AAA81375 I 0.848
AAH57704 Xenopus laevis AAH57704 I 0.848
Q91579 Xenopus laevis Q91579 I 0.848
CELF3 Gasterosteus aculeatus ENSGACG00000003274 I 0.838
AAH46942 Xenopus laevis AAH46942 I 0.838
CELF3 Takifugu rubripes ENSTRUG00000014225 I 0.838
Q7ZWM3 Xenopus laevis Q7ZWM3 I 0.838
celf3 Danio rerio ENSDARG00000034668 I 0.838
estExt_Genewise1Plus.C_6380019 Capitella teleta estExt_Genewise1Plus.C_6380019 I 0.833
CELF3 Danio rerio ENSDARG00000006983 I 0.819
CELF3_BOVIN Bos taurus ENSBTAG00000019131 I 0.814
Celf6 Mus musculus ENSMUSG00000032297 I 0.814
B7NZE2_RABIT Oryctolagus cuniculus ENSOCUG00000003551 I 0.814
CELF3 Monodelphis domestica ENSMODG00000018897 I 0.814
CELF3 Equus caballus ENSECAG00000020365 I 0.814
CELF3 Homo sapiens ENSG00000159409 I 0.814
ENSGGOG00000021973 Gorilla gorilla ENSGGOG00000021973 I 0.814
CELF3 Loxodonta africana ENSLAFG00000030147 I 0.814
CELF3 Callithrix jacchus ENSCJAG00000007857 I 0.814
CELF3 Cavia porcellus ENSCPOG00000003539 I 0.814
Celf3 Mus musculus ENSMUSG00000028137 I 0.814
CELF3 Canis familiaris ENSCAFG00000012794 I 0.814
Brunol6 Rattus norvegicus ENSRNOG00000010817 I 0.814
D4A916_RAT Rattus norvegicus ENSRNOG00000020875 I 0.814
CELF3 Pan troglodytes ENSPTRG00000001293 I 0.814
Ame_R007421 Ailuropoda melanoleuca Ame_R007421 I 0.814
CELF3 Oryzias latipes ENSORLG00000010447 I 0.812
Ame_R007822 Ailuropoda melanoleuca Ame_R007822 I 0.810
LOC100414308 Callithrix jacchus ENSCJAG00000018355 I 0.810
CELF6 Sus scrofa ENSSSCG00000001928 I 0.810
BRUNOL6 Homo sapiens ENSG00000140488 D 0.810
CELF6 Pteropus vampyrus ENSPVAG00000006406 I 0.810
HEXA Macaca mulatta ENSMMUG00000010687 I 0.810
CELF6 Bos taurus ENSBTAG00000014092 I 0.810
CELF6 Gorilla gorilla ENSGGOG00000015463 I 0.810
CELF6 Felis catus ENSFCAG00000016249 I 0.810
ENSPPYG00000006615 Pongo pygmaeus ENSPPYG00000006615 I 0.805
CELF6 Meleagris gallopavo ENSMGAG00000001804 I 0.805
CELF3 Sus scrofa ENSSSCG00000006618 I 0.800
CELF6 Loxodonta africana ENSLAFG00000020985 I 0.797
ACH69784 Xenopus laevis ACH69784 I 0.796
CELF3 Procavia capensis ENSPCAG00000001623 I 0.795
CELF6 Pan troglodytes ENSPTRG00000034360 I 0.795
ENSPPYG00000009118 Pongo pygmaeus ENSPPYG00000009118 I 0.791
Bm1_27610 Brugia malayi Bm1_27610 I 0.790
LOC100386457 Callithrix jacchus ENSCJAG00000021135 I 0.787
CELF4 Gorilla gorilla ENSGGOG00000013920 I 0.787
CELF4 Pteropus vampyrus ENSPVAG00000009204 I 0.787
BRUNOL4 Homo sapiens ENSG00000101489 D 0.787
CELF3 Ochotona princeps ENSOPRG00000011130 I 0.786
CELF4 Tursiops truncatus ENSTTRG00000016826 I 0.782
CELF4 Gasterosteus aculeatus ENSGACG00000008752 I 0.777
CELF6 Ornithorhynchus anatinus ENSOANG00000011308 I 0.773
CELF5 Macropus eugenii ENSMEUG00000013080 I 0.773
Celf6 Dipodomys ordii ENSDORG00000004882 I 0.762
CRE09771 Caenorhabditis remanei CRE09771 I 0.744
CBG15358 Caenorhabditis briggsae CBG15358 I 0.744
unc-75 Caenorhabditis elegans C17D12.2 D 0.739
BRUNOL5 Taeniopygia guttata ENSTGUG00000000514 I 0.738
CELF5 Meleagris gallopavo ENSMGAG00000001169 I 0.738
ENSCING00000001999 Ciona intestinalis ENSCING00000001999 I 0.735
XP_781047.2 Strongylocentrotus purpuratus XP_781047.2 I 0.731
XP_001192920.1 Strongylocentrotus purpuratus XP_001192920.1 I 0.731
CELF5 Canis familiaris ENSCAFG00000019263 I 0.729
CELF5 Tursiops truncatus ENSTTRG00000009625 I 0.724
CELF6 Oryctolagus cuniculus ENSOCUG00000021663 I 0.724
CELF5 Pteropus vampyrus ENSPVAG00000014619 I 0.724
ENSCSAVG00000007538 Ciona savignyi ENSCSAVG00000007538 I 0.720
CELF5 Sus scrofa ENSSSCG00000013476 I 0.720
CELF3 Macaca mulatta ENSMMUG00000016952 I 0.719
CELF5 Bos taurus ENSBTAG00000021774 I 0.716
CELF3 Oryzias latipes ENSORLG00000002630 I 0.716
celf4 Danio rerio ENSDARG00000070045 I 0.714
CELF4 Ochotona princeps ENSOPRG00000014415 I 0.711
CELF5 Echinops telfairi ENSETEG00000016221 I 0.710
CELF5 Otolemur garnettii ENSOGAG00000014161 I 0.710
Celf5 Dipodomys ordii ENSDORG00000005915 I 0.705
CELF5 Procavia capensis ENSPCAG00000002170 I 0.701