celf4 (Danio rerio)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSDARG00000070045 T36214_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
BRUNOL5
M157_0.6 		Homo sapiens UGUGUKK RNAcompete
Ray et al.(2013)
RNCMPT00166 		0.701
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000075951 RRM 1 30
ENSDARP00000075951 RRM 49 117
ENSDARP00000075951 RRM 350 420

Links

Other RRM family RBPs
Other Danio rerio RBPs

31 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CELF5 Meleagris gallopavo ENSMGAG00000001169 I 0.888
BRUNOL5 Taeniopygia guttata ENSTGUG00000000514 I 0.888
CELF5 Canis familiaris ENSCAFG00000019263 I 0.865
CELF5 Pteropus vampyrus ENSPVAG00000014619 I 0.859
CELF5 Tursiops truncatus ENSTTRG00000009625 I 0.859
CELF5 Sus scrofa ENSSSCG00000013476 I 0.854
CELF5 Bos taurus ENSBTAG00000021774 I 0.848
CELF5 Otolemur garnettii ENSOGAG00000014161 I 0.841
CELF3 Takifugu rubripes ENSTRUG00000012064 I 0.838
Celf5 Dipodomys ordii ENSDORG00000005915 I 0.835
CELF5 Echinops telfairi ENSETEG00000016221 I 0.835
CELF5 Procavia capensis ENSPCAG00000002170 I 0.830
CELF6 Cavia porcellus ENSCPOG00000025842 I 0.819
CELF3 Microcebus murinus ENSMICG00000010644 N 0.818
CELF4 Oryzias latipes ENSORLG00000008913 I 0.799
CELF3 Homo sapiens ENSG00000159409 I 0.778
CELF4 Takifugu rubripes ENSTRUG00000015481 I 0.767
celf4 Xenopus tropicalis ENSXETG00000020486 I 0.762
CELF4 Oryctolagus cuniculus ENSOCUG00000024790 I 0.757
CELF4 Loxodonta africana ENSLAFG00000021352 I 0.757
CELF3 Macaca mulatta ENSMMUG00000016952 I 0.753
Celf4 Mus musculus ENSMUSG00000024268 I 0.752
celf5 Danio rerio ENSDARG00000071375 I 0.729
CELF5 Oryzias latipes ENSORLG00000004600 I 0.714
BRUNOL5 Homo sapiens ENSG00000161082 D 0.705
CELF6 Monodelphis domestica ENSMODG00000001784 I 0.705
CELF3 Gasterosteus aculeatus ENSGACG00000011707 I 0.700
Ame_R011948 Ailuropoda melanoleuca Ame_R011948 I 0.700
CELF3 Tetraodon nigroviridis ENSTNIG00000008062 I 0.700
AAH46942 Xenopus laevis AAH46942 I 0.700
Q7ZWM3 Xenopus laevis Q7ZWM3 I 0.700