celf5 (Xenopus tropicalis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSXETG00000014344 T42893_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
BRUNOL5
M157_0.6 		Homo sapiens UGUGUKK RNAcompete
Ray et al.(2013)
RNCMPT00166 		0.905
BRUNOL6
M178_0.6 		Homo sapiens UGUGDKG RNAcompete
Ray et al.(2013)
RNCMPT00187 		0.810
unc-75
M079_0.6 		Caenorhabditis elegans UGUUGUD RNAcompete
Ray et al.(2013)
RNCMPT00081 		0.758
BRUNOL4
M004_0.6 		Homo sapiens KGUGUKK RNAcompete
Ray et al.(2013)
RNCMPT00004 		0.758
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSXETP00000031370 RRM 9 78
ENSXETP00000031370 RRM 98 165
ENSXETP00000031370 RRM 373 443

Links

Other RRM family RBPs
Other Xenopus tropicalis RBPs

89 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ACH69785 Xenopus laevis ACH69785 I 0.990
Ame_R011948 Ailuropoda melanoleuca Ame_R011948 I 0.914
BRUNOL5 Homo sapiens ENSG00000161082 D 0.905
celf5 Danio rerio ENSDARG00000071375 I 0.871
CELF5 Oryzias latipes ENSORLG00000004600 I 0.867
CELF5 Pan troglodytes ENSPTRG00000010259 I 0.867
CELF4 Oryctolagus cuniculus ENSOCUG00000024790 I 0.862
CELF4 Loxodonta africana ENSLAFG00000021352 I 0.862
celf4 Xenopus tropicalis ENSXETG00000020486 I 0.857
Celf4 Mus musculus ENSMUSG00000024268 I 0.857
CELF4 Oryzias latipes ENSORLG00000008913 I 0.852
CELF6 Monodelphis domestica ENSMODG00000001784 I 0.843
CELF3 Gasterosteus aculeatus ENSGACG00000011707 I 0.833
CELF4 Takifugu rubripes ENSTRUG00000015481 I 0.833
CELF3 Gasterosteus aculeatus ENSGACG00000003274 I 0.833
CELF3 Tetraodon nigroviridis ENSTNIG00000008062 I 0.833
estExt_Genewise1Plus.C_6380019 Capitella teleta estExt_Genewise1Plus.C_6380019 I 0.833
CELF3 Takifugu rubripes ENSTRUG00000014225 I 0.833
celf3 Danio rerio ENSDARG00000034668 I 0.824
Brunol6 Rattus norvegicus ENSRNOG00000010817 I 0.819
Celf6 Mus musculus ENSMUSG00000032297 I 0.819
CELF6 Felis catus ENSFCAG00000016249 I 0.814
CELF6 Sus scrofa ENSSSCG00000001928 I 0.814
CELF6 Pteropus vampyrus ENSPVAG00000006406 I 0.814
HEXA Macaca mulatta ENSMMUG00000010687 I 0.814
CELF6 Gorilla gorilla ENSGGOG00000015463 I 0.814
CELF6 Bos taurus ENSBTAG00000014092 I 0.814
LOC100414308 Callithrix jacchus ENSCJAG00000018355 I 0.814
Ame_R007822 Ailuropoda melanoleuca Ame_R007822 I 0.814
AAH72134 Xenopus laevis AAH72134 I 0.810
ENSPPYG00000006615 Pongo pygmaeus ENSPPYG00000006615 I 0.810
AAH57704 Xenopus laevis AAH57704 I 0.810
BRUNOL6 Homo sapiens ENSG00000140488 D 0.810
AAA81375 Xenopus laevis AAA81375 I 0.810
Q91579 Xenopus laevis Q91579 I 0.810
CELF6 Meleagris gallopavo ENSMGAG00000001804 I 0.809
AAH46942 Xenopus laevis AAH46942 I 0.805
Q7ZWM3 Xenopus laevis Q7ZWM3 I 0.805
CELF6 Loxodonta africana ENSLAFG00000020985 I 0.802
CELF6 Pan troglodytes ENSPTRG00000034360 I 0.800
CELF3 Pan troglodytes ENSPTRG00000001293 I 0.795
CELF3 Loxodonta africana ENSLAFG00000030147 I 0.795
D4A916_RAT Rattus norvegicus ENSRNOG00000020875 I 0.795
CELF3 Callithrix jacchus ENSCJAG00000007857 I 0.795
CELF3 Monodelphis domestica ENSMODG00000018897 I 0.795
CELF3 Canis familiaris ENSCAFG00000012794 I 0.795
CELF3 Danio rerio ENSDARG00000006983 I 0.795
CELF3 Homo sapiens ENSG00000159409 I 0.795
CELF3 Cavia porcellus ENSCPOG00000003539 I 0.795
Ame_R007421 Ailuropoda melanoleuca Ame_R007421 I 0.795
CELF3_BOVIN Bos taurus ENSBTAG00000019131 I 0.795
B7NZE2_RABIT Oryctolagus cuniculus ENSOCUG00000003551 I 0.795
ENSGGOG00000021973 Gorilla gorilla ENSGGOG00000021973 I 0.795
CELF3 Equus caballus ENSECAG00000020365 I 0.795
Celf3 Mus musculus ENSMUSG00000028137 I 0.795
CELF3 Oryzias latipes ENSORLG00000010447 I 0.780
CELF3 Sus scrofa ENSSSCG00000006618 I 0.776
CELF3 Procavia capensis ENSPCAG00000001623 I 0.771
CELF5 Macropus eugenii ENSMEUG00000013080 I 0.768
ENSPPYG00000009118 Pongo pygmaeus ENSPPYG00000009118 I 0.768
Bm1_27610 Brugia malayi Bm1_27610 I 0.767
ACH69784 Xenopus laevis ACH69784 I 0.763
CELF4 Pteropus vampyrus ENSPVAG00000009204 I 0.763
CELF4 Gorilla gorilla ENSGGOG00000013920 I 0.763
BRUNOL4 Homo sapiens ENSG00000101489 D 0.763
LOC100386457 Callithrix jacchus ENSCJAG00000021135 I 0.763
CELF6 Ornithorhynchus anatinus ENSOANG00000011308 I 0.763
CELF3 Ochotona princeps ENSOPRG00000011130 I 0.762
CBG15358 Caenorhabditis briggsae CBG15358 I 0.758
CELF4 Tursiops truncatus ENSTTRG00000016826 I 0.758
unc-75 Caenorhabditis elegans C17D12.2 D 0.758
CRE09771 Caenorhabditis remanei CRE09771 I 0.758
Celf6 Dipodomys ordii ENSDORG00000004882 I 0.757
CELF4 Gasterosteus aculeatus ENSGACG00000008752 I 0.754
CELF5 Canis familiaris ENSCAFG00000019263 I 0.738
CELF5 Tursiops truncatus ENSTTRG00000009625 I 0.733
CELF5 Pteropus vampyrus ENSPVAG00000014619 I 0.733
CELF5 Sus scrofa ENSSSCG00000013476 I 0.730
BRUNOL5 Taeniopygia guttata ENSTGUG00000000514 I 0.729
CELF5 Meleagris gallopavo ENSMGAG00000001169 I 0.729
CELF5 Bos taurus ENSBTAG00000021774 I 0.725
XP_781047.2 Strongylocentrotus purpuratus XP_781047.2 I 0.722
XP_001192920.1 Strongylocentrotus purpuratus XP_001192920.1 I 0.722
CELF3 Oryzias latipes ENSORLG00000002630 I 0.720
CELF5 Otolemur garnettii ENSOGAG00000014161 I 0.719
Celf5 Dipodomys ordii ENSDORG00000005915 I 0.714
CELF6 Oryctolagus cuniculus ENSOCUG00000021663 I 0.710
CELF5 Procavia capensis ENSPCAG00000002170 I 0.706
CELF5 Echinops telfairi ENSETEG00000016221 I 0.700