CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Gm5698
(
Mus musculus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSMUSG00000086151
T39427_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMUSP00000116628
RRM
85
154
LLLSNLHFGVSDADIQKLFAEFGTLRKSAVHYDRSGQSLGTAHVHFERKADALKAMREYNGVPLDGHPMN
Links
Other
RRM
family RBPs
Other
Mus musculus
RBPs
77 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Gm5699
Mus musculus
ENSMUSG00000087346
N
0.986
AAH92013
Xenopus laevis
AAH92013
N
0.857
Q58EA2
Xenopus laevis
Q58EA2
N
0.857
THOC4
Gallus gallus
ENSGALG00000007237
N
0.857
Ame_R000656
Ailuropoda melanoleuca
Ame_R000656
N
0.857
THOC4
Loxodonta africana
ENSLAFG00000003083
N
0.857
THOC4
Gorilla gorilla
ENSGGOG00000013935
N
0.857
THOC4
Homo sapiens
ENSG00000183684
N
0.857
THOC4
Anolis carolinensis
ENSACAG00000010526
N
0.857
tho4
Danio rerio
ENSDARG00000077732
N
0.857
LOC100055097
Equus caballus
ENSECAG00000018754
N
0.857
THOC4
Cavia porcellus
ENSCPOG00000013710
N
0.857
THOC4
Echinops telfairi
ENSETEG00000016596
N
0.857
THOC4_BOVIN
Bos taurus
ENSBTAG00000008498
N
0.857
THOC4
Canis familiaris
ENSCAFG00000005877
N
0.857
THOC4
Microcebus murinus
ENSMICG00000017403
N
0.857
ENSMGAG00000005389
Meleagris gallopavo
ENSMGAG00000005389
N
0.857
ENSPPYG00000008749
Pongo pygmaeus
ENSPPYG00000008749
N
0.857
THOC4
Pan troglodytes
ENSPTRG00000009774
N
0.857
Thoc4
Mus musculus
ENSMUSG00000025134
N
0.857
ENSTBEG00000005834
Tupaia belangeri
ENSTBEG00000005834
N
0.857
THOC4
Monodelphis domestica
ENSMODG00000003030
N
0.857
THOC4
Pteropus vampyrus
ENSPVAG00000017866
N
0.857
THOC4
Otolemur garnettii
ENSOGAG00000012409
N
0.857
thoc4
Xenopus tropicalis
ENSXETG00000005391
N
0.857
THOC4
Tursiops truncatus
ENSTTRG00000012275
N
0.857
THOC4
Macaca mulatta
ENSMMUG00000012884
N
0.857
Thoc4
Rattus norvegicus
ENSRNOG00000036687
N
0.857
THOC4
Oryzias latipes
ENSORLG00000012331
N
0.829
Q6GLW1
Xenopus laevis
Q6GLW1
N
0.829
AAH74336
Xenopus laevis
AAH74336
N
0.829
THOC4
Tetraodon nigroviridis
ENSTNIG00000011595
N
0.814
ENSMLUG00000009555
Myotis lucifugus
ENSMLUG00000009555
N
0.814
THOC4
Erinaceus europaeus
ENSEEUG00000010164
N
0.800
Refbp2
Mus musculus
ENSMUSG00000060244
N
0.800
THOC4
Gasterosteus aculeatus
ENSGACG00000013328
N
0.800
ENSCJAG00000021543
Callithrix jacchus
ENSCJAG00000021543
N
0.786
ENSMLUG00000007513
Myotis lucifugus
ENSMLUG00000007513
N
0.786
ENSMLUG00000010127
Myotis lucifugus
ENSMLUG00000010127
N
0.771
ENSMLUG00000002626
Myotis lucifugus
ENSMLUG00000002626
N
0.771
ENSMLUG00000015043
Myotis lucifugus
ENSMLUG00000015043
N
0.771
ENSMLUG00000016194
Myotis lucifugus
ENSMLUG00000016194
N
0.771
ENSMLUG00000015142
Myotis lucifugus
ENSMLUG00000015142
N
0.771
ENSMLUG00000007617
Myotis lucifugus
ENSMLUG00000007617
N
0.757
ENSMLUG00000007634
Myotis lucifugus
ENSMLUG00000007634
N
0.757
ENSMLUG00000013041
Myotis lucifugus
ENSMLUG00000013041
N
0.757
THOC4
Takifugu rubripes
ENSTRUG00000008828
N
0.757
ENSMLUG00000013085
Myotis lucifugus
ENSMLUG00000013085
N
0.757
ENSMLUG00000011599
Myotis lucifugus
ENSMLUG00000011599
N
0.757
ENSMLUG00000009822
Myotis lucifugus
ENSMLUG00000009822
N
0.757
ENSMLUG00000008923
Myotis lucifugus
ENSMLUG00000008923
N
0.757
Smp_108820
Schistosoma mansoni
Smp_108820
N
0.757
ENSMLUG00000001217
Myotis lucifugus
ENSMLUG00000001217
N
0.757
ENSGACG00000018178
Gasterosteus aculeatus
ENSGACG00000018178
N
0.757
ENSMLUG00000001244
Myotis lucifugus
ENSMLUG00000001244
N
0.757
ENSMLUG00000002669
Myotis lucifugus
ENSMLUG00000002669
N
0.757
ENSMLUG00000004521
Myotis lucifugus
ENSMLUG00000004521
N
0.757
ENSMLUG00000004992
Myotis lucifugus
ENSMLUG00000004992
N
0.757
e_gw.394.68.1
Branchiostoma floridae
e_gw.394.68.1
N
0.743
ENSMLUG00000014480
Myotis lucifugus
ENSMLUG00000014480
N
0.743
ENSMLUG00000011212
Myotis lucifugus
ENSMLUG00000011212
N
0.743
e_gw.5.817.1
Branchiostoma floridae
e_gw.5.817.1
N
0.743
ENSMLUG00000010456
Myotis lucifugus
ENSMLUG00000010456
N
0.743
ISCW001860
Ixodes scapularis
ISCW001860
N
0.743
ENSMLUG00000009247
Myotis lucifugus
ENSMLUG00000009247
N
0.743
ENSTBEG00000013201
Tupaia belangeri
ENSTBEG00000013201
N
0.732
amel4_ncbi_hmm10980
Apis mellifera
amel4_ncbi_hmm10980
N
0.729
ENSTRUG00000003051
Takifugu rubripes
ENSTRUG00000003051
N
0.729
ENSORLG00000001620
Oryzias latipes
ENSORLG00000001620
N
0.729
ENSMLUG00000009447
Myotis lucifugus
ENSMLUG00000009447
N
0.729
ENSMLUG00000006641
Myotis lucifugus
ENSMLUG00000006641
N
0.729
BGIBMGA005323
Bombyx mori
BGIBMGA005323
N
0.729
ENSMLUG00000010927
Myotis lucifugus
ENSMLUG00000010927
N
0.729
ENSMLUG00000009449
Myotis lucifugus
ENSMLUG00000009449
N
0.714
AGAP006733
Anopheles gambiae
AGAP006733
N
0.714
ENSMLUG00000008410
Myotis lucifugus
ENSMLUG00000008410
N
0.714
PHUM023420
Pediculus humanus
PHUM023420
N
0.700