ENSRNOG00000031316 (Rattus norvegicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSRNOG00000031316 T41211_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.792
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.792
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.792
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.778
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000058408 RRM 2 71
ENSRNOP00000058408 RRM 86 155

Links

Other RRM family RBPs
Other Rattus norvegicus RBPs

120 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.762
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.762
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.762
HNRNPA1 Homo sapiens ENSG00000135486 D 0.762
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.762
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.762
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.762
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.762
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.762
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.762
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.762
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.762
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.762
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.762
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.762
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.762
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.762
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.762
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.762
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.762
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.762
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.762
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.762
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.762
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.762
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.762
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.762
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.762
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.762
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.762
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.762
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.761
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.755
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.755
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.755
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.755
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.755
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.755
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.755
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.748
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.748
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.748
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.748
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.748
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.748
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.748
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.748
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.741
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.741
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.741
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.741
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.741
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.741
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.741
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.741
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.741
LOC100054206 Equus caballus ENSECAG00000006699 I 0.740
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.740
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.736
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.735
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.735
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.735
ENSMMUG00000022448 Macaca mulatta ENSMMUG00000022448 I 0.734
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.733
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.733
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.732
ENSMMUG00000008337 Macaca mulatta ENSMMUG00000008337 I 0.732
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.728
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.728
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.728
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.728
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.728
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.728
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.726
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.726
ENSCAFG00000017494 Canis familiaris ENSCAFG00000017494 I 0.725
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.721
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.721
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.719
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.719
ENSCJAG00000005326 Callithrix jacchus ENSCJAG00000005326 I 0.718
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.717
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.717
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.714
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.714
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.714
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.714
LOC785445 Bos taurus ENSBTAG00000025621 I 0.714
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.714
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.714
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.714
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.714
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.712
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.712
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.712
ENSPPYG00000003855 Pongo pygmaeus ENSPPYG00000003855 I 0.711
ENSMMUG00000013424 Macaca mulatta ENSMMUG00000013424 I 0.708
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.707
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.707
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.707
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.707
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.707
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.707
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.705
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.705
XR_011984.1 Macaca mulatta ENSMMUG00000011640 I 0.704
ENSCAFG00000006663 Canis familiaris ENSCAFG00000006663 I 0.701
ENSCJAG00000005407 Callithrix jacchus ENSCJAG00000005407 I 0.701
ENSRNOG00000021280 Rattus norvegicus ENSRNOG00000021280 I 0.701
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.701
CBU92546 Xenopus laevis CBU92546 I 0.701
CBF67672 Xenopus laevis CBF67672 I 0.701
AAH72090 Xenopus laevis AAH72090 I 0.701
AAH45260 Xenopus laevis AAH45260 I 0.701
ENSCAFG00000005164 Canis familiaris ENSCAFG00000005164 I 0.701
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.701
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.701
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.701
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.701
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.701