PTBP1 (Monodelphis domestica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSMODG00000006302 T39093_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PTBP1
M303_0.6 		Homo sapiens Sequence logo not available UCUU SELEX
Cook et al.(2011)
46_9214659 		0.938
PTBP1
M228_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00269 		0.938
PTBP1
M227_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00268 		0.938
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSMODP00000007822 RRM 62 117
ENSMODP00000007822 RRM 187 253
ENSMODP00000007822 RRM 366 432
ENSMODP00000007822 RRM 483 547
ENSMODP00000027569 RRM 61 116
ENSMODP00000027569 RRM 186 252
ENSMODP00000027569 RRM 339 405
ENSMODP00000027569 RRM 456 520

Links

Other RRM family RBPs
Other Monodelphis domestica RBPs

89 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PTBP1 Macropus eugenii ENSMEUG00000006710 I 1.000
Q5F456_CHICK Gallus gallus ENSGALG00000001962 I 0.969
PTBP1 Meleagris gallopavo ENSMGAG00000003503 I 0.969
PTBP1 Ornithorhynchus anatinus ENSOANG00000009191 I 0.961
PTBP1 Taeniopygia guttata ENSTGUG00000000641 I 0.945
PTBP1 Sus scrofa ENSSSCG00000013421 I 0.938
PTBP1 Homo sapiens ENSG00000011304 D 0.938
ENSPPYG00000009289 Pongo pygmaeus ENSPPYG00000009289 I 0.938
XR_025154.1 Pan troglodytes ENSPTRG00000010165 I 0.938
PTBP1 Cavia porcellus ENSCPOG00000025512 I 0.934
PTBP1 Canis familiaris ENSCAFG00000019693 I 0.934
PTBP1 Callithrix jacchus ENSCJAG00000020162 I 0.930
PTBP1 Pteropus vampyrus ENSPVAG00000008288 I 0.926
Ptbp1 Mus musculus ENSMUSG00000006498 I 0.918
PTBP1 Tursiops truncatus ENSTTRG00000003439 I 0.918
AAF00041 Xenopus laevis AAF00041 I 0.914
AAH45068 Xenopus laevis AAH45068 I 0.914
Ptbp1 Rattus norvegicus ENSRNOG00000010448 I 0.914
PTBP1 Equus caballus ENSECAG00000018845 I 0.914
PTBP1 Macaca mulatta ENSMMUG00000016450 I 0.887
PTBP1 Loxodonta africana ENSLAFG00000027110 I 0.875
ptbp1 Xenopus tropicalis ENSXETG00000021661 I 0.871
Ptbp1 Dipodomys ordii ENSDORG00000002835 I 0.867
ENSMLUG00000003320 Myotis lucifugus ENSMLUG00000003320 I 0.863
ptbp1a Danio rerio ENSDARG00000019362 I 0.856
ENSETEG00000006890 Echinops telfairi ENSETEG00000006890 I 0.848
AAH97557 Xenopus laevis AAH97557 I 0.840
PTBP1 Gasterosteus aculeatus ENSGACG00000011048 I 0.837
ptbp1b Danio rerio ENSDARG00000031907 I 0.832
PTBP1 Procavia capensis ENSPCAG00000007614 I 0.824
PTBP1 Oryzias latipes ENSORLG00000011430 I 0.823
PTBP1 Takifugu rubripes ENSTRUG00000011360 I 0.813
PTBP1 Oryzias latipes ENSORLG00000014019 I 0.805
ROD1 Equus caballus ENSECAG00000021243 I 0.804
ROD1 Sus scrofa ENSSSCG00000005466 I 0.804
ROD1 Oryctolagus cuniculus ENSOCUG00000017670 I 0.797
rod1 Xenopus tropicalis ENSXETG00000002225 I 0.797
ROD1 Cavia porcellus ENSCPOG00000011586 I 0.797
ROD1 Danio rerio ENSDARG00000043757 I 0.797
PTBP2 Anolis carolinensis ENSACAG00000005600 I 0.794
ROD1 Homo sapiens ENSG00000119314 I 0.793
ROD1 Pan troglodytes ENSPTRG00000021263 I 0.793
ROD1 Gorilla gorilla ENSGGOG00000001755 I 0.793
Rod1 Mus musculus ENSMUSG00000028382 I 0.793
ROD1 Monodelphis domestica ENSMODG00000005502 I 0.793
ROD1 Macaca mulatta ENSMMUG00000000464 I 0.793
Rod1 Rattus norvegicus ENSRNOG00000016334 I 0.793
ENSPPYG00000019504 Pongo pygmaeus ENSPPYG00000019504 I 0.793
ROD1 Bos taurus ENSBTAG00000016750 I 0.792
PTBP2 Meleagris gallopavo ENSMGAG00000007308 I 0.790
PTBP2 Loxodonta africana ENSLAFG00000017343 I 0.790
Q9YI60_CHICK Gallus gallus ENSGALG00000005552 I 0.790
ROD1 Loxodonta africana ENSLAFG00000011358 I 0.789
ROD1 Anolis carolinensis ENSACAG00000017316 I 0.789
PTBP2 Gorilla gorilla ENSGGOG00000000659 I 0.786
PTBP2 Canis familiaris ENSCAFG00000020080 I 0.786
PTBP2 Ornithorhynchus anatinus ENSOANG00000004656 I 0.786
Ptbp2 Mus musculus ENSMUSG00000028134 I 0.786
PTBP2 Vicugna pacos ENSVPAG00000002841 I 0.786
PTBP2 Macaca mulatta ENSMMUG00000016130 I 0.786
PTBP2 Tursiops truncatus ENSTTRG00000012904 I 0.786
PTBP2 Homo sapiens ENSG00000117569 I 0.786
PTBP2 Tarsius syrichta ENSTSYG00000002576 I 0.786
PTBP2 Oryctolagus cuniculus ENSOCUG00000017608 I 0.786
ENSPPYG00000001132 Pongo pygmaeus ENSPPYG00000001132 I 0.786
Ame_R002925 Ailuropoda melanoleuca Ame_R002925 I 0.786
Ptbp2 Rattus norvegicus ENSRNOG00000010827 I 0.786
PTBP1 Takifugu rubripes ENSTRUG00000010168 I 0.786
PTBP2 Cavia porcellus ENSCPOG00000003762 I 0.786
PTBP2 Pan troglodytes ENSPTRG00000000987 I 0.786
LOC100057336 Equus caballus ENSECAG00000015783 I 0.783
PTBP2 Monodelphis domestica ENSMODG00000004211 I 0.782
ROD1 Callithrix jacchus ENSCJAG00000017686 I 0.781
PTBP2 Taeniopygia guttata ENSTGUG00000005558 I 0.778
PTBP2 Myotis lucifugus ENSMLUG00000002522 I 0.774
ROD1 Canis familiaris ENSCAFG00000003015 I 0.770
PTBP2 Danio rerio ENSDARG00000015901 I 0.765
PTBP2 Oryzias latipes ENSORLG00000013557 I 0.764
ENSRNOG00000027820 Rattus norvegicus ENSRNOG00000027820 I 0.759
PTBP2 Tetraodon nigroviridis ENSTNIG00000018950 I 0.757
ROD1 Takifugu rubripes ENSTRUG00000007042 I 0.754
PTBP2 Gasterosteus aculeatus ENSGACG00000014892 I 0.753
ROD1 Tetraodon nigroviridis ENSTNIG00000002790 I 0.751
PTBP2 Oryzias latipes ENSORLG00000019191 I 0.743
PTBP1 Gasterosteus aculeatus ENSGACG00000013587 I 0.730
PTBP2 Gasterosteus aculeatus ENSGACG00000000940 I 0.714
PTBP2 Microcebus murinus ENSMICG00000008543 I 0.708
PTBP2 Spermophilus tridecemlineatus ENSSTOG00000011727 I 0.704