PTBP2 (Oryzias latipes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSORLG00000019191 T40260_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PTBP1
M227_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00268 		0.750
PTBP1
M303_0.6 		Homo sapiens Sequence logo not available UCUU SELEX
Cook et al.(2011)
46_9214659 		0.750
PTBP1
M228_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00269 		0.750
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000023919 RRM 55 112
ENSORLP00000023919 RRM 170 236
ENSORLP00000023919 RRM 350 418
ENSORLP00000023919 RRM 469 533

Links

Other RRM family RBPs
Other Oryzias latipes RBPs

53 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PTBP2 Tetraodon nigroviridis ENSTNIG00000018950 I 0.900
PTBP2 Gasterosteus aculeatus ENSGACG00000000940 I 0.873
PTBP2 Danio rerio ENSDARG00000015901 I 0.840
Q9YI60_CHICK Gallus gallus ENSGALG00000005552 I 0.835
PTBP2 Meleagris gallopavo ENSMGAG00000007308 I 0.835
PTBP2 Oryzias latipes ENSORLG00000013557 I 0.831
PTBP2 Anolis carolinensis ENSACAG00000005600 I 0.831
PTBP2 Gasterosteus aculeatus ENSGACG00000014892 I 0.828
PTBP2 Ornithorhynchus anatinus ENSOANG00000004656 I 0.827
ENSPPYG00000001132 Pongo pygmaeus ENSPPYG00000001132 I 0.827
PTBP2 Canis familiaris ENSCAFG00000020080 I 0.827
Ptbp2 Mus musculus ENSMUSG00000028134 I 0.827
LOC100057336 Equus caballus ENSECAG00000015783 I 0.827
PTBP2 Homo sapiens ENSG00000117569 I 0.827
PTBP2 Loxodonta africana ENSLAFG00000017343 I 0.827
PTBP2 Gorilla gorilla ENSGGOG00000000659 I 0.827
PTBP2 Pan troglodytes ENSPTRG00000000987 I 0.827
PTBP2 Macaca mulatta ENSMMUG00000016130 I 0.827
PTBP2 Cavia porcellus ENSCPOG00000003762 I 0.827
PTBP2 Tursiops truncatus ENSTTRG00000012904 I 0.827
PTBP2 Oryctolagus cuniculus ENSOCUG00000017608 I 0.827
PTBP2 Vicugna pacos ENSVPAG00000002841 I 0.827
PTBP2 Tarsius syrichta ENSTSYG00000002576 I 0.827
Ame_R002925 Ailuropoda melanoleuca Ame_R002925 I 0.827
Ptbp2 Rattus norvegicus ENSRNOG00000010827 I 0.827
PTBP2 Monodelphis domestica ENSMODG00000004211 I 0.823
PTBP2 Taeniopygia guttata ENSTGUG00000005558 I 0.823
PTBP2 Myotis lucifugus ENSMLUG00000002522 I 0.812
PTBP2 Microcebus murinus ENSMICG00000008543 I 0.750
PTBP1 Canis familiaris ENSCAFG00000019693 I 0.747
XR_025154.1 Pan troglodytes ENSPTRG00000010165 I 0.747
PTBP1 Taeniopygia guttata ENSTGUG00000000641 I 0.747
PTBP1 Sus scrofa ENSSSCG00000013421 I 0.747
PTBP1 Homo sapiens ENSG00000011304 D 0.747
ENSPPYG00000009289 Pongo pygmaeus ENSPPYG00000009289 I 0.747
PTBP1 Meleagris gallopavo ENSMGAG00000003503 I 0.743
PTBP1 Macropus eugenii ENSMEUG00000006710 I 0.743
Q5F456_CHICK Gallus gallus ENSGALG00000001962 I 0.743
PTBP1 Monodelphis domestica ENSMODG00000006302 I 0.743
PTBP1 Callithrix jacchus ENSCJAG00000020162 I 0.739
PTBP1 Cavia porcellus ENSCPOG00000025512 I 0.736
PTBP1 Pteropus vampyrus ENSPVAG00000008288 I 0.736
PTBP2 Spermophilus tridecemlineatus ENSSTOG00000011727 I 0.735
AAH45068 Xenopus laevis AAH45068 I 0.733
Ptbp1 Mus musculus ENSMUSG00000006498 I 0.728
Ptbp1 Rattus norvegicus ENSRNOG00000010448 I 0.728
PTBP1 Tursiops truncatus ENSTTRG00000003439 I 0.728
PTBP1 Equus caballus ENSECAG00000018845 I 0.728
PTBP1 Ornithorhynchus anatinus ENSOANG00000009191 I 0.725
AAF00041 Xenopus laevis AAF00041 I 0.725
ptbp1a Danio rerio ENSDARG00000019362 I 0.713
PTBP1 Macaca mulatta ENSMMUG00000016450 I 0.705
ptbp1b Danio rerio ENSDARG00000031907 I 0.701