XM_002892115.1 (Arabidopsis lyrata)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgenesh2_kg.1__275__AT1G03457.2 T44486_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.1__275__AT1G03457.2 RRM 14 83
fgenesh2_kg.1__275__AT1G03457.2 RRM 111 180
fgenesh2_kg.1__275__AT1G03457.2 RRM 341 411

Links

Other RRM family RBPs
Other Arabidopsis lyrata RBPs

24 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AT1G03457 Arabidopsis thaliana AT1G03457-TAIR-G N 0.953
XM_002872750.1 Arabidopsis lyrata fgenesh2_kg.6__3385__AT4G03110.1 N 0.812
AtRBP-DR1 Arabidopsis thaliana AT4G03110-TAIR-G N 0.812
cassava29564.valid.m1 Manihot esculenta cassava29564.valid.m1 N 0.806
29647.m002041 Ricinus communis 29647.m002041 N 0.801
cassava24659.valid.m1 Manihot esculenta cassava24659.valid.m1 N 0.791
PK12631.1 Cannabis sativa PK12631.1 N 0.777
Glyma19g39300.1 Glycine max Glyma19g39300.1 N 0.777
Glyma03g36650.1 Glycine max Glyma03g36650.1 N 0.777
GSVIVG00011013001 Vitis vinifera GSVIVG00011013001 N 0.777
B9I9Y4_POPTR Populus trichocarpa POPTR_0014s13070 N 0.773
B9GTC1_POPTR Populus trichocarpa POPTR_0002s22730 N 0.768
Cucsa.084710 Cucumis sativus Cucsa.084710 N 0.758
ppa006027m Prunus persica ppa006027m N 0.758
mgf007780m Mimulus guttatus mgf007780m N 0.750
MDP0000123673 Malus x domestica MDP0000123673 N 0.749
BRADI2G60300 Brachypodium distachyon BRADI2G60300 N 0.742
MDP0000138865 Malus x domestica MDP0000138865 N 0.741
Glyma02g17090.1 Glycine max Glyma02g17090.1 N 0.739
Glyma10g02700.1 Glycine max Glyma10g02700.1 N 0.735
LOC_Os01g71200 Oryza sativa LOC_Os01g71200 N 0.723
BRADI2G27260 Brachypodium distachyon BRADI2G27260 N 0.714
LOC_Os05g30980 Oryza sativa LOC_Os05g30980 N 0.714
SB09G018610 Sorghum bicolor Sb09g018610 N 0.704