LOC_Os01g71200 (Oryza sativa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 LOC_Os01g71200 T44943_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os01g71200.1 RRM 42 111
LOC_Os01g71200.1 RRM 130 201
LOC_Os01g71200.1 RRM 376 446

Links

Other RRM family RBPs
Other Oryza sativa RBPs

28 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
BRADI2G60300 Brachypodium distachyon BRADI2G60300 N 0.920
BRADI2G27260 Brachypodium distachyon BRADI2G27260 N 0.906
Sb03g045340 Sorghum bicolor Sb03g045340 N 0.897
LOC_Os05g30980 Oryza sativa LOC_Os05g30980 N 0.883
GRMZM2G005459 Zea mays GRMZM2G005459 N 0.873
SB09G018610 Sorghum bicolor Sb09g018610 N 0.869
BGIOSIBCE018791 Oryza indica BGIOSIBCE018791 N 0.864
GRMZM2G177001 Zea mays GRMZM2G177001 N 0.854
Glyma19g39300.1 Glycine max Glyma19g39300.1 N 0.822
Glyma03g36650.1 Glycine max Glyma03g36650.1 N 0.817
GSVIVG00011013001 Vitis vinifera GSVIVG00011013001 N 0.817
cassava29564.valid.m1 Manihot esculenta cassava29564.valid.m1 N 0.812
PK12631.1 Cannabis sativa PK12631.1 N 0.808
B9I9Y4_POPTR Populus trichocarpa POPTR_0014s13070 N 0.808
cassava24659.valid.m1 Manihot esculenta cassava24659.valid.m1 N 0.808
B9GTC1_POPTR Populus trichocarpa POPTR_0002s22730 N 0.808
ppa006027m Prunus persica ppa006027m N 0.798
MDP0000138865 Malus x domestica MDP0000138865 N 0.794
29647.m002041 Ricinus communis 29647.m002041 N 0.793
MDP0000123673 Malus x domestica MDP0000123673 N 0.789
mgf007780m Mimulus guttatus mgf007780m N 0.784
Glyma02g17090.1 Glycine max Glyma02g17090.1 N 0.784
Glyma10g02700.1 Glycine max Glyma10g02700.1 N 0.775
Cucsa.084710 Cucumis sativus Cucsa.084710 N 0.765
XM_002872750.1 Arabidopsis lyrata fgenesh2_kg.6__3385__AT4G03110.1 N 0.762
AtRBP-DR1 Arabidopsis thaliana AT4G03110-TAIR-G N 0.757
XM_002892115.1 Arabidopsis lyrata fgenesh2_kg.1__275__AT1G03457.2 N 0.723
AT1G03457 Arabidopsis thaliana AT1G03457-TAIR-G N 0.709