XM_002872750.1 (Arabidopsis lyrata)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgenesh2_kg.6__3385__AT4G03110.1 T44570_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.6__3385__AT4G03110.1 RRM 20 89
fgenesh2_kg.6__3385__AT4G03110.1 RRM 108 178
fgenesh2_kg.6__3385__AT4G03110.1 RRM 357 427

Links

Other RRM family RBPs
Other Arabidopsis lyrata RBPs

28 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AtRBP-DR1 Arabidopsis thaliana AT4G03110-TAIR-G N 0.991
cassava29564.valid.m1 Manihot esculenta cassava29564.valid.m1 N 0.836
29647.m002041 Ricinus communis 29647.m002041 N 0.826
PK12631.1 Cannabis sativa PK12631.1 N 0.822
GSVIVG00011013001 Vitis vinifera GSVIVG00011013001 N 0.822
B9I9Y4_POPTR Populus trichocarpa POPTR_0014s13070 N 0.822
Glyma19g39300.1 Glycine max Glyma19g39300.1 N 0.817
cassava24659.valid.m1 Manihot esculenta cassava24659.valid.m1 N 0.817
B9GTC1_POPTR Populus trichocarpa POPTR_0002s22730 N 0.817
XM_002892115.1 Arabidopsis lyrata fgenesh2_kg.1__275__AT1G03457.2 N 0.812
Glyma03g36650.1 Glycine max Glyma03g36650.1 N 0.812
ppa006027m Prunus persica ppa006027m N 0.808
Cucsa.084710 Cucumis sativus Cucsa.084710 N 0.793
AT1G03457 Arabidopsis thaliana AT1G03457-TAIR-G N 0.793
mgf007780m Mimulus guttatus mgf007780m N 0.789
MDP0000123673 Malus x domestica MDP0000123673 N 0.788
MDP0000138865 Malus x domestica MDP0000138865 N 0.784
Glyma02g17090.1 Glycine max Glyma02g17090.1 N 0.775
Glyma10g02700.1 Glycine max Glyma10g02700.1 N 0.765
LOC_Os01g71200 Oryza sativa LOC_Os01g71200 N 0.762
BRADI2G60300 Brachypodium distachyon BRADI2G60300 N 0.757
SB09G018610 Sorghum bicolor Sb09g018610 N 0.757
GRMZM2G177001 Zea mays GRMZM2G177001 N 0.748
LOC_Os05g30980 Oryza sativa LOC_Os05g30980 N 0.748
BRADI2G27260 Brachypodium distachyon BRADI2G27260 N 0.743
GRMZM2G005459 Zea mays GRMZM2G005459 N 0.732
Sb03g045340 Sorghum bicolor Sb03g045340 N 0.729
BGIOSIBCE018791 Oryza indica BGIOSIBCE018791 N 0.724