cassava29564.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava29564.valid.m1 T49266_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava29564.valid.m1 RRM 17 86
cassava29564.valid.m1 RRM 105 174
cassava29564.valid.m1 RRM 353 423

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

29 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava24659.valid.m1 Manihot esculenta cassava24659.valid.m1 N 0.948
29647.m002041 Ricinus communis 29647.m002041 N 0.948
B9I9Y4_POPTR Populus trichocarpa POPTR_0014s13070 N 0.934
B9GTC1_POPTR Populus trichocarpa POPTR_0002s22730 N 0.915
Glyma19g39300.1 Glycine max Glyma19g39300.1 N 0.915
GSVIVG00011013001 Vitis vinifera GSVIVG00011013001 N 0.915
ppa006027m Prunus persica ppa006027m N 0.910
Glyma03g36650.1 Glycine max Glyma03g36650.1 N 0.905
PK12631.1 Cannabis sativa PK12631.1 N 0.900
MDP0000123673 Malus x domestica MDP0000123673 N 0.891
MDP0000138865 Malus x domestica MDP0000138865 N 0.887
mgf007780m Mimulus guttatus mgf007780m N 0.868
Cucsa.084710 Cucumis sativus Cucsa.084710 N 0.863
Glyma10g02700.1 Glycine max Glyma10g02700.1 N 0.848
Glyma02g17090.1 Glycine max Glyma02g17090.1 N 0.844
AtRBP-DR1 Arabidopsis thaliana AT4G03110-TAIR-G N 0.840
XM_002872750.1 Arabidopsis lyrata fgenesh2_kg.6__3385__AT4G03110.1 N 0.836
BRADI2G60300 Brachypodium distachyon BRADI2G60300 N 0.826
LOC_Os01g71200 Oryza sativa LOC_Os01g71200 N 0.812
BRADI2G27260 Brachypodium distachyon BRADI2G27260 N 0.808
LOC_Os05g30980 Oryza sativa LOC_Os05g30980 N 0.808
XM_002892115.1 Arabidopsis lyrata fgenesh2_kg.1__275__AT1G03457.2 N 0.806
Sb03g045340 Sorghum bicolor Sb03g045340 N 0.798
AT1G03457 Arabidopsis thaliana AT1G03457-TAIR-G N 0.791
SB09G018610 Sorghum bicolor Sb09g018610 N 0.789
GRMZM2G177001 Zea mays GRMZM2G177001 N 0.784
BGIOSIBCE018791 Oryza indica BGIOSIBCE018791 N 0.784
GRMZM2G005459 Zea mays GRMZM2G005459 N 0.779
mgf010250m Mimulus guttatus mgf010250m N 0.755