LOC_Os05g30980 (Oryza sativa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 LOC_Os05g30980 T45048_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os05g30980.1 RRM 48 117
LOC_Os05g30980.1 RRM 136 207
LOC_Os05g30980.1 RRM 382 452
LOC_Os05g30980.2 RRM 53 93
LOC_Os05g30980.2 RRM 112 183
LOC_Os05g30980.2 RRM 358 428

Links

Other RRM family RBPs
Other Oryza sativa RBPs

28 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
BGIOSIBCE018791 Oryza indica BGIOSIBCE018791 N 0.977
BRADI2G27260 Brachypodium distachyon BRADI2G27260 N 0.934
SB09G018610 Sorghum bicolor Sb09g018610 N 0.887
LOC_Os01g71200 Oryza sativa LOC_Os01g71200 N 0.883
GRMZM2G177001 Zea mays GRMZM2G177001 N 0.878
BRADI2G60300 Brachypodium distachyon BRADI2G60300 N 0.873
Sb03g045340 Sorghum bicolor Sb03g045340 N 0.850
GSVIVG00011013001 Vitis vinifera GSVIVG00011013001 N 0.831
GRMZM2G005459 Zea mays GRMZM2G005459 N 0.831
Glyma19g39300.1 Glycine max Glyma19g39300.1 N 0.826
Glyma03g36650.1 Glycine max Glyma03g36650.1 N 0.826
PK12631.1 Cannabis sativa PK12631.1 N 0.808
B9I9Y4_POPTR Populus trichocarpa POPTR_0014s13070 N 0.808
29647.m002041 Ricinus communis 29647.m002041 N 0.808
cassava29564.valid.m1 Manihot esculenta cassava29564.valid.m1 N 0.808
MDP0000138865 Malus x domestica MDP0000138865 N 0.804
B9GTC1_POPTR Populus trichocarpa POPTR_0002s22730 N 0.803
cassava24659.valid.m1 Manihot esculenta cassava24659.valid.m1 N 0.798
ppa006027m Prunus persica ppa006027m N 0.789
Glyma10g02700.1 Glycine max Glyma10g02700.1 N 0.789
mgf007780m Mimulus guttatus mgf007780m N 0.779
Glyma02g17090.1 Glycine max Glyma02g17090.1 N 0.779
MDP0000123673 Malus x domestica MDP0000123673 N 0.779
Cucsa.084710 Cucumis sativus Cucsa.084710 N 0.765
AtRBP-DR1 Arabidopsis thaliana AT4G03110-TAIR-G N 0.752
XM_002872750.1 Arabidopsis lyrata fgenesh2_kg.6__3385__AT4G03110.1 N 0.748
XM_002892115.1 Arabidopsis lyrata fgenesh2_kg.1__275__AT1G03457.2 N 0.714