B9GTC1_POPTR (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0002s22730 T45474_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0002s22730.1 RRM 21 90
POPTR_0002s22730.1 RRM 109 178
POPTR_0002s22730.1 RRM 313 383

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

29 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
B9I9Y4_POPTR Populus trichocarpa POPTR_0014s13070 N 0.929
cassava29564.valid.m1 Manihot esculenta cassava29564.valid.m1 N 0.915
29647.m002041 Ricinus communis 29647.m002041 N 0.905
cassava24659.valid.m1 Manihot esculenta cassava24659.valid.m1 N 0.905
Glyma19g39300.1 Glycine max Glyma19g39300.1 N 0.896
GSVIVG00011013001 Vitis vinifera GSVIVG00011013001 N 0.891
Glyma03g36650.1 Glycine max Glyma03g36650.1 N 0.886
PK12631.1 Cannabis sativa PK12631.1 N 0.877
ppa006027m Prunus persica ppa006027m N 0.872
Glyma10g02700.1 Glycine max Glyma10g02700.1 N 0.858
MDP0000123673 Malus x domestica MDP0000123673 N 0.853
Cucsa.084710 Cucumis sativus Cucsa.084710 N 0.848
MDP0000138865 Malus x domestica MDP0000138865 N 0.844
Glyma02g17090.1 Glycine max Glyma02g17090.1 N 0.844
AtRBP-DR1 Arabidopsis thaliana AT4G03110-TAIR-G N 0.822
BRADI2G60300 Brachypodium distachyon BRADI2G60300 N 0.817
XM_002872750.1 Arabidopsis lyrata fgenesh2_kg.6__3385__AT4G03110.1 N 0.817
mgf007780m Mimulus guttatus mgf007780m N 0.816
LOC_Os01g71200 Oryza sativa LOC_Os01g71200 N 0.808
LOC_Os05g30980 Oryza sativa LOC_Os05g30980 N 0.803
BRADI2G27260 Brachypodium distachyon BRADI2G27260 N 0.798
BGIOSIBCE018791 Oryza indica BGIOSIBCE018791 N 0.784
SB09G018610 Sorghum bicolor Sb09g018610 N 0.784
GRMZM2G177001 Zea mays GRMZM2G177001 N 0.779
Sb03g045340 Sorghum bicolor Sb03g045340 N 0.775
XM_002892115.1 Arabidopsis lyrata fgenesh2_kg.1__275__AT1G03457.2 N 0.768
AT1G03457 Arabidopsis thaliana AT1G03457-TAIR-G N 0.763
GRMZM2G005459 Zea mays GRMZM2G005459 N 0.756
mgf010250m Mimulus guttatus mgf010250m N 0.712