POPTR_0002s12570 (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0002s12570 T45460_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0002s12570.1 RRM 33 103
POPTR_0002s12570.1 RRM 121 190
POPTR_0002s12570.1 RRM 212 281
POPTR_0002s12570.1 RRM 314 383

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

67 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
B9GNU4_POPTR Populus trichocarpa POPTR_0014s02550 N 0.929
30170.m013847 Ricinus communis 30170.m013847 N 0.893
GSVIVG00009455001 Vitis vinifera GSVIVG00009455001 N 0.875
ppa002620m Prunus persica ppa002620m N 0.868
ppa002618m Prunus persica ppa002618m N 0.868
Medtr4g130250 Medicago truncatula Medtr4g130250 N 0.865
Glyma07g33860.1 Glycine max Glyma07g33860.1 N 0.858
mgf009542m Mimulus guttatus mgf009542m N 0.858
Glyma02g11580.1 Glycine max Glyma02g11580.1 N 0.858
ppa002607m Prunus persica ppa002607m N 0.858
Glyma17g35890.1 Glycine max Glyma17g35890.1 N 0.854
A9PEX9_POPTR Populus trichocarpa POPTR_0001s31160 N 0.854
mgf004973m Mimulus guttatus mgf004973m N 0.851
29801.m003152 Ricinus communis 29801.m003152 N 0.851
B9HS30_POPTR Populus trichocarpa POPTR_0009s10220 N 0.851
Glyma14g09300.1 Glycine max Glyma14g09300.1 N 0.843
MDP0000497543 Malus x domestica MDP0000497543 N 0.840
GSVIVG00022079001 Vitis vinifera GSVIVG00022079001 N 0.840
cassava6947.valid.m1 Manihot esculenta cassava6947.valid.m1 N 0.836
Cucsa.244510 Cucumis sativus Cucsa.244510 N 0.836
MDP0000253709 Malus x domestica MDP0000253709 N 0.833
Medtr1g024150 Medicago truncatula Medtr1g024150 N 0.833
MDP0000156895 Malus x domestica MDP0000156895 N 0.833
PK02172.1 Cannabis sativa PK02172.1 N 0.826
cassava12359.valid.m1 Manihot esculenta cassava12359.valid.m1 N 0.826
MDP0000283985 Malus x domestica MDP0000283985 N 0.826
Cucsa.219740 Cucumis sativus Cucsa.219740 N 0.822
Medtr3g147440 Medicago truncatula Medtr3g147440 N 0.815
Glyma06g04460.1 Glycine max Glyma06g04460.1 N 0.815
cassava17495.valid.m1 Manihot esculenta cassava17495.valid.m1 N 0.815
Glyma04g04300.1 Glycine max Glyma04g04300.1 N 0.794
XM_002883853.1 Arabidopsis lyrata scaffold_303734.1 N 0.776
PK00659.1 Cannabis sativa PK00659.1 N 0.776
XM_002869128.1 Arabidopsis lyrata Al_scaffold_0007_654 N 0.776
PAB2 Arabidopsis thaliana AT4G34110-TAIR-G N 0.769
LOC_Os09g02700 Oryza sativa LOC_Os09g02700 N 0.762
BGIOSIBCE029001 Oryza indica BGIOSIBCE029001 N 0.762
LjSGA_012037.1 Lotus japonicus LjSGA_012037.1 N 0.758
estExt_fgenesh1_pg.C_2570045 Physcomitrella patens estExt_fgenesh1_pg.C_2570045 N 0.758
LOC_Os08g22354 Oryza sativa LOC_Os08g22354 N 0.755
BGIOSIBCE027387 Oryza indica BGIOSIBCE027387 N 0.755
e_gw1.51.213.1 Physcomitrella patens e_gw1.51.213.1 N 0.754
PAB8 Arabidopsis thaliana AT1G49760-TAIR-G N 0.754
XM_002891485.1 Arabidopsis lyrata scaffold_104684.1 N 0.754
estExt_fgenesh1_pm.C_2810008 Physcomitrella patens estExt_fgenesh1_pm.C_2810008 N 0.751
estExt_Genewise1.C_1260120 Physcomitrella patens estExt_Genewise1.C_1260120 N 0.751
mgf005294m Mimulus guttatus mgf005294m N 0.747
GRMZM2G013619 Zea mays GRMZM2G013619 N 0.740
gw1.0.426.1 Selaginella moellendorfii gw1.0.426.1 N 0.740
mgf004596m Mimulus guttatus mgf004596m N 0.737
BRADI5G14980 Brachypodium distachyon BRADI5G14980 N 0.733
GRMZM2G352129 Zea mays GRMZM2G352129 N 0.733
LOC_Os04g42600 Oryza sativa LOC_Os04g42600 N 0.730
SB06G021850 Sorghum bicolor Sb06g021850 N 0.730
BGIOSIBCE015822 Oryza indica BGIOSIBCE015822 N 0.730
BRADI4G08430 Brachypodium distachyon BRADI4G08430 N 0.726
MDP0000286821 Malus x domestica MDP0000286821 N 0.722
BRADI3G20460 Brachypodium distachyon BRADI3G20460 N 0.716
GSVIVG00013699001 Vitis vinifera GSVIVG00013699001 N 0.715
XM_002878634.1 Arabidopsis lyrata scaffold_400317.1 N 0.715
Sb02g017910 Sorghum bicolor Sb02g017910 N 0.715
MDP0000212007 Malus x domestica MDP0000212007 N 0.715
PAB4 Arabidopsis thaliana AT2G23350-TAIR-G N 0.715
e_gw1.24.89.1 Selaginella moellendorfii e_gw1.24.89.1 N 0.712
cassava31766.valid.m1 Manihot esculenta cassava31766.valid.m1 N 0.708
GRMZM2G102829 Zea mays GRMZM2G102829 N 0.701
B9H7X9_POPTR Populus trichocarpa POPTR_0005s22040 N 0.701