GSVIVG00009455001 (Vitis vinifera)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 GSVIVG00009455001 T44634_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
GSVIVT00009455001 RRM 20 90
GSVIVT00009455001 RRM 108 177
GSVIVT00009455001 RRM 199 268
GSVIVT00009455001 RRM 302 371

Links

Other RRM family RBPs
Other Vitis vinifera RBPs

69 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29801.m003152 Ricinus communis 29801.m003152 N 0.875
POPTR_0002s12570 Populus trichocarpa POPTR_0002s12570 N 0.875
GSVIVG00022079001 Vitis vinifera GSVIVG00022079001 N 0.872
Glyma02g11580.1 Glycine max Glyma02g11580.1 N 0.868
ppa002607m Prunus persica ppa002607m N 0.868
30170.m013847 Ricinus communis 30170.m013847 N 0.865
cassava6947.valid.m1 Manihot esculenta cassava6947.valid.m1 N 0.865
ppa002620m Prunus persica ppa002620m N 0.865
ppa002618m Prunus persica ppa002618m N 0.865
MDP0000497543 Malus x domestica MDP0000497543 N 0.865
Glyma07g33860.1 Glycine max Glyma07g33860.1 N 0.865
B9GNU4_POPTR Populus trichocarpa POPTR_0014s02550 N 0.865
A9PEX9_POPTR Populus trichocarpa POPTR_0001s31160 N 0.865
MDP0000156895 Malus x domestica MDP0000156895 N 0.858
MDP0000253709 Malus x domestica MDP0000253709 N 0.858
B9HS30_POPTR Populus trichocarpa POPTR_0009s10220 N 0.858
cassava12359.valid.m1 Manihot esculenta cassava12359.valid.m1 N 0.854
Cucsa.244510 Cucumis sativus Cucsa.244510 N 0.854
cassava17495.valid.m1 Manihot esculenta cassava17495.valid.m1 N 0.847
Medtr4g130250 Medicago truncatula Medtr4g130250 N 0.847
mgf004973m Mimulus guttatus mgf004973m N 0.843
Cucsa.219740 Cucumis sativus Cucsa.219740 N 0.840
mgf009542m Mimulus guttatus mgf009542m N 0.836
Medtr1g024150 Medicago truncatula Medtr1g024150 N 0.829
PK02172.1 Cannabis sativa PK02172.1 N 0.829
MDP0000283985 Malus x domestica MDP0000283985 N 0.822
Glyma17g35890.1 Glycine max Glyma17g35890.1 N 0.822
Glyma14g09300.1 Glycine max Glyma14g09300.1 N 0.819
Medtr3g147440 Medicago truncatula Medtr3g147440 N 0.811
Glyma06g04460.1 Glycine max Glyma06g04460.1 N 0.804
PK00659.1 Cannabis sativa PK00659.1 N 0.797
mgf005294m Mimulus guttatus mgf005294m N 0.783
XM_002869128.1 Arabidopsis lyrata Al_scaffold_0007_654 N 0.783
BGIOSIBCE027387 Oryza indica BGIOSIBCE027387 N 0.780
LOC_Os08g22354 Oryza sativa LOC_Os08g22354 N 0.780
Glyma04g04300.1 Glycine max Glyma04g04300.1 N 0.779
BGIOSIBCE029001 Oryza indica BGIOSIBCE029001 N 0.779
LOC_Os09g02700 Oryza sativa LOC_Os09g02700 N 0.779
PAB8 Arabidopsis thaliana AT1G49760-TAIR-G N 0.776
XM_002891485.1 Arabidopsis lyrata scaffold_104684.1 N 0.776
XM_002883853.1 Arabidopsis lyrata scaffold_303734.1 N 0.772
estExt_fgenesh1_pg.C_2570045 Physcomitrella patens estExt_fgenesh1_pg.C_2570045 N 0.769
estExt_Genewise1.C_1260120 Physcomitrella patens estExt_Genewise1.C_1260120 N 0.769
estExt_fgenesh1_pm.C_2810008 Physcomitrella patens estExt_fgenesh1_pm.C_2810008 N 0.765
PAB2 Arabidopsis thaliana AT4G34110-TAIR-G N 0.765
LjSGA_012037.1 Lotus japonicus LjSGA_012037.1 N 0.762
mgf004596m Mimulus guttatus mgf004596m N 0.762
e_gw1.51.213.1 Physcomitrella patens e_gw1.51.213.1 N 0.762
LOC_Os04g42600 Oryza sativa LOC_Os04g42600 N 0.758
BGIOSIBCE015822 Oryza indica BGIOSIBCE015822 N 0.758
BRADI3G20460 Brachypodium distachyon BRADI3G20460 N 0.752
Sb02g017910 Sorghum bicolor Sb02g017910 N 0.751
BRADI5G14980 Brachypodium distachyon BRADI5G14980 N 0.747
GRMZM2G013619 Zea mays GRMZM2G013619 N 0.747
BRADI4G08430 Brachypodium distachyon BRADI4G08430 N 0.744
GRMZM2G352129 Zea mays GRMZM2G352129 N 0.744
GRMZM2G102829 Zea mays GRMZM2G102829 N 0.740
SB06G021850 Sorghum bicolor Sb06g021850 N 0.737
gw1.0.426.1 Selaginella moellendorfii gw1.0.426.1 N 0.733
e_gw1.24.89.1 Selaginella moellendorfii e_gw1.24.89.1 N 0.733
GSVIVG00013699001 Vitis vinifera GSVIVG00013699001 N 0.730
XM_002878634.1 Arabidopsis lyrata scaffold_400317.1 N 0.722
PAB4 Arabidopsis thaliana AT2G23350-TAIR-G N 0.722
Glyma20g31120.1 Glycine max Glyma20g31120.1 N 0.712
MDP0000286821 Malus x domestica MDP0000286821 N 0.712
MDP0000212007 Malus x domestica MDP0000212007 N 0.712
ppa002584m Prunus persica ppa002584m N 0.705
cassava31766.valid.m1 Manihot esculenta cassava31766.valid.m1 N 0.705
B9H7X9_POPTR Populus trichocarpa POPTR_0005s22040 N 0.701