Medtr4g130250 (Medicago truncatula)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Medtr4g130250 T54525_0.6 PlantGDB (2010-Oct-15)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Medtr4g130250.1 RRM 36 106
Medtr4g130250.1 RRM 124 193
Medtr4g130250.1 RRM 215 284
Medtr4g130250.1 RRM 318 387

Links

Other RRM family RBPs
Other Medicago truncatula RBPs

67 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma07g33860.1 Glycine max Glyma07g33860.1 N 0.929
Glyma02g11580.1 Glycine max Glyma02g11580.1 N 0.918
A9PEX9_POPTR Populus trichocarpa POPTR_0001s31160 N 0.890
B9HS30_POPTR Populus trichocarpa POPTR_0009s10220 N 0.883
ppa002607m Prunus persica ppa002607m N 0.883
B9GNU4_POPTR Populus trichocarpa POPTR_0014s02550 N 0.879
cassava6947.valid.m1 Manihot esculenta cassava6947.valid.m1 N 0.875
MDP0000253709 Malus x domestica MDP0000253709 N 0.872
MDP0000156895 Malus x domestica MDP0000156895 N 0.872
MDP0000497543 Malus x domestica MDP0000497543 N 0.872
PK02172.1 Cannabis sativa PK02172.1 N 0.868
POPTR_0002s12570 Populus trichocarpa POPTR_0002s12570 N 0.865
29801.m003152 Ricinus communis 29801.m003152 N 0.865
Cucsa.244510 Cucumis sativus Cucsa.244510 N 0.861
30170.m013847 Ricinus communis 30170.m013847 N 0.861
ppa002618m Prunus persica ppa002618m N 0.858
ppa002620m Prunus persica ppa002620m N 0.858
Glyma17g35890.1 Glycine max Glyma17g35890.1 N 0.854
Glyma14g09300.1 Glycine max Glyma14g09300.1 N 0.851
Cucsa.219740 Cucumis sativus Cucsa.219740 N 0.851
GSVIVG00009455001 Vitis vinifera GSVIVG00009455001 N 0.847
GSVIVG00022079001 Vitis vinifera GSVIVG00022079001 N 0.840
mgf009542m Mimulus guttatus mgf009542m N 0.840
cassava17495.valid.m1 Manihot esculenta cassava17495.valid.m1 N 0.840
cassava12359.valid.m1 Manihot esculenta cassava12359.valid.m1 N 0.836
MDP0000283985 Malus x domestica MDP0000283985 N 0.833
mgf004973m Mimulus guttatus mgf004973m N 0.829
Medtr1g024150 Medicago truncatula Medtr1g024150 N 0.826
Medtr3g147440 Medicago truncatula Medtr3g147440 N 0.819
XM_002869128.1 Arabidopsis lyrata Al_scaffold_0007_654 N 0.797
XM_002883853.1 Arabidopsis lyrata scaffold_303734.1 N 0.794
mgf005294m Mimulus guttatus mgf005294m N 0.790
XM_002891485.1 Arabidopsis lyrata scaffold_104684.1 N 0.790
PAB8 Arabidopsis thaliana AT1G49760-TAIR-G N 0.786
PAB2 Arabidopsis thaliana AT4G34110-TAIR-G N 0.786
estExt_fgenesh1_pg.C_2570045 Physcomitrella patens estExt_fgenesh1_pg.C_2570045 N 0.776
estExt_fgenesh1_pm.C_2810008 Physcomitrella patens estExt_fgenesh1_pm.C_2810008 N 0.772
LOC_Os09g02700 Oryza sativa LOC_Os09g02700 N 0.772
PK00659.1 Cannabis sativa PK00659.1 N 0.772
BGIOSIBCE029001 Oryza indica BGIOSIBCE029001 N 0.772
BGIOSIBCE027387 Oryza indica BGIOSIBCE027387 N 0.770
LOC_Os08g22354 Oryza sativa LOC_Os08g22354 N 0.770
mgf004596m Mimulus guttatus mgf004596m N 0.765
LOC_Os04g42600 Oryza sativa LOC_Os04g42600 N 0.762
BGIOSIBCE015822 Oryza indica BGIOSIBCE015822 N 0.762
Glyma06g04460.1 Glycine max Glyma06g04460.1 N 0.762
estExt_Genewise1.C_1260120 Physcomitrella patens estExt_Genewise1.C_1260120 N 0.762
Glyma04g04300.1 Glycine max Glyma04g04300.1 N 0.758
e_gw1.51.213.1 Physcomitrella patens e_gw1.51.213.1 N 0.758
BRADI4G08430 Brachypodium distachyon BRADI4G08430 N 0.758
GRMZM2G013619 Zea mays GRMZM2G013619 N 0.754
GRMZM2G352129 Zea mays GRMZM2G352129 N 0.751
BRADI5G14980 Brachypodium distachyon BRADI5G14980 N 0.751
gw1.0.426.1 Selaginella moellendorfii gw1.0.426.1 N 0.747
SB06G021850 Sorghum bicolor Sb06g021850 N 0.747
LjSGA_012037.1 Lotus japonicus LjSGA_012037.1 N 0.744
XM_002878634.1 Arabidopsis lyrata scaffold_400317.1 N 0.733
BRADI3G20460 Brachypodium distachyon BRADI3G20460 N 0.730
PAB4 Arabidopsis thaliana AT2G23350-TAIR-G N 0.730
e_gw1.24.89.1 Selaginella moellendorfii e_gw1.24.89.1 N 0.730
Sb02g017910 Sorghum bicolor Sb02g017910 N 0.726
MDP0000286821 Malus x domestica MDP0000286821 N 0.719
GRMZM2G102829 Zea mays GRMZM2G102829 N 0.719
MDP0000212007 Malus x domestica MDP0000212007 N 0.715
cassava31766.valid.m1 Manihot esculenta cassava31766.valid.m1 N 0.705
Glyma20g31120.1 Glycine max Glyma20g31120.1 N 0.701
B9H7X9_POPTR Populus trichocarpa POPTR_0005s22040 N 0.701