CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GD11341
(
Drosophila simulans
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FBgn0183090
T43915_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
pAbp
M130_0.6
Drosophila melanogaster
GAAAAHV
RNAcompete
Ray et al.(2013)
RNCMPT00139
0.996
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0209743
RRM
4
74
LYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTMNFDLVRNKPIR
FBpp0209743
RRM
92
161
VFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVY
FBpp0209743
RRM
185
254
VYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSL
FBpp0209743
RRM
289
358
LYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLY
Links
Other
RRM
family RBPs
Other
Drosophila simulans
RBPs
60 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GM21847
Drosophila sechellia
FBgn0176724
I
0.996
pAbp
Drosophila melanogaster
FBgn0261619
D
0.996
GE11925
Drosophila yakuba
FBgn0229707
I
0.986
GG21846
Drosophila erecta
FBgn0114024
I
0.986
GF12652
Drosophila ananassae
FBgn0089688
I
0.932
GK19652
Drosophila willistoni
FBgn0221650
I
0.922
GJ21671
Drosophila virilis
FBgn0208790
I
0.922
GL11548
Drosophila persimilis
FBgn0149157
I
0.918
GI18654
Drosophila mojavensis
FBgn0141393
I
0.915
GA18673-RA
Drosophila pseudoobscura
FBgn0078673
I
0.915
GH21052
Drosophila grimshawi
FBgn0128514
I
0.908
AAEL010318
Aedes aegypti
AAEL010318
I
0.801
CpipJ_CPIJ007980
Culex pipiens
CpipJ_CPIJ007980
I
0.784
CPIJ007980
Culex quinquefasciatus
CPIJ007980
I
0.784
PHUM617090
Pediculus humanus
PHUM617090
I
0.784
AGAP011092
Anopheles gambiae
AGAP011092
I
0.780
amel4_ncbi_hmm2036
Apis mellifera
amel4_ncbi_hmm2036
I
0.777
amel4_ncbi_hmm1700
Apis mellifera
amel4_ncbi_hmm1700
I
0.777
nasonia_NCBI_hmm394743
Nasonia vitripennis
nasonia_NCBI_hmm394743
I
0.777
amel4_ncbi_hmm1364
Apis mellifera
amel4_ncbi_hmm1364
I
0.777
nasonia_NCBI_hmm390743
Nasonia vitripennis
nasonia_NCBI_hmm390743
I
0.777
nasonia_NCBI_hmm386743
Nasonia vitripennis
nasonia_NCBI_hmm386743
I
0.777
BGIBMGA003469
Bombyx mori
BGIBMGA003469
I
0.762
ISCW014211
Ixodes scapularis
ISCW014211
I
0.755
BDE_estExt_fgenesh1_pg.C_380037
Daphnia pulex
BDE_estExt_fgenesh1_pg.C_380037
I
0.727
DGIL_AUG5s5076g2t1
Acyrtosiphon pisum
DGIL_AUG5s5076g2t1
I
0.722
AAH73435
Xenopus laevis
AAH73435
I
0.717
ENSOANG00000010001
Ornithorhynchus anatinus
ENSOANG00000010001
I
0.714
PABPC4
Gallus gallus
ENSGALG00000003800
I
0.710
estExt_Genewise1.C_1790010
Capitella teleta
estExt_Genewise1.C_1790010
I
0.709
CBN04295
Caenorhabditis brenneri
CBN04295
I
0.709
PABPC4
Taeniopygia guttata
ENSTGUG00000001266
I
0.708
e_gw1.115.135.1
Lottia gigantea
e_gw1.115.135.1
I
0.706
Bm1_16080
Brugia malayi
Bm1_16080
I
0.706
LOAG_01058
Loa loa
LOAG_01058
I
0.706
pab-1
Caenorhabditis elegans
Y106G6H.2
I
0.706
Bm1_06880
Brugia malayi
Bm1_06880
I
0.706
DGIL_AUG5s9152g1t1
Acyrtosiphon pisum
DGIL_AUG5s9152g1t1
I
0.705
pabpc1
Xenopus tropicalis
ENSXETG00000006635
I
0.704
XM_001365232.1
Monodelphis domestica
ENSMODG00000017657
I
0.704
D4AC21_RAT
Rattus norvegicus
ENSRNOG00000015642
I
0.704
XP_001177907.1
Strongylocentrotus purpuratus
XP_001177907.1
I
0.702
CBG02207
Caenorhabditis briggsae
CBG02207
N
0.702
XP_801795.2
Strongylocentrotus purpuratus
XP_801795.2
I
0.702
ENSPPYG00000001506
Pongo pygmaeus
ENSPPYG00000001506
I
0.701
PABPC4
Pan troglodytes
ENSPTRG00000000573
I
0.701
PABPC4
Sus scrofa
ENSSSCG00000003660
I
0.701
PABPC4
Canis familiaris
ENSCAFG00000003081
I
0.701
A4IFC3_BOVIN
Bos taurus
ENSBTAG00000017125
I
0.701
A6MKJ4_CALJA
Callithrix jacchus
ENSCJAG00000002512
I
0.701
P20965
Xenopus laevis
P20965
I
0.701
CAA40721
Xenopus laevis
CAA40721
I
0.701
AAH52100
Xenopus laevis
AAH52100
I
0.701
PABPC4
Cavia porcellus
ENSCPOG00000009552
I
0.701
LOC100054235
Equus caballus
ENSECAG00000009396
I
0.701
ENSMICG00000000431
Microcebus murinus
ENSMICG00000000431
I
0.701
PABPC4
Loxodonta africana
ENSLAFG00000000151
I
0.701
PABPC4
Gorilla gorilla
ENSGGOG00000004002
I
0.701
PABPC4
Homo sapiens
ENSG00000090621
D
0.701
PABPC4
Macaca mulatta
ENSMMUG00000007497
I
0.701