GE11925 (Drosophila yakuba)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 FBgn0229707 T44280_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
pAbp
M130_0.6 		Drosophila melanogaster GAAAAHV RNAcompete
Ray et al.(2013)
RNCMPT00139 		0.989
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
FBpp0256935 RRM 4 74
FBpp0256935 RRM 92 161
FBpp0256935 RRM 185 253
FBpp0256935 RRM 289 358

Links

Other RRM family RBPs
Other Drosophila yakuba RBPs

91 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GM21847 Drosophila sechellia FBgn0176724 I 0.989
pAbp Drosophila melanogaster FBgn0261619 D 0.989
GD11341 Drosophila simulans FBgn0183090 I 0.986
GG21846 Drosophila erecta FBgn0114024 I 0.979
GF12652 Drosophila ananassae FBgn0089688 I 0.929
GJ21671 Drosophila virilis FBgn0208790 I 0.925
GL11548 Drosophila persimilis FBgn0149157 I 0.922
GI18654 Drosophila mojavensis FBgn0141393 I 0.918
GA18673-RA Drosophila pseudoobscura FBgn0078673 I 0.918
GK19652 Drosophila willistoni FBgn0221650 I 0.918
GH21052 Drosophila grimshawi FBgn0128514 I 0.911
AAEL010318 Aedes aegypti AAEL010318 I 0.804
AGAP011092 Anopheles gambiae AGAP011092 I 0.790
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.786
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.786
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.786
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.786
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.786
PHUM617090 Pediculus humanus PHUM617090 I 0.780
nasonia_NCBI_hmm390743 Nasonia vitripennis nasonia_NCBI_hmm390743 I 0.779
nasonia_NCBI_hmm386743 Nasonia vitripennis nasonia_NCBI_hmm386743 I 0.779
nasonia_NCBI_hmm394743 Nasonia vitripennis nasonia_NCBI_hmm394743 I 0.779
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.766
ISCW014211 Ixodes scapularis ISCW014211 I 0.759
BDE_estExt_fgenesh1_pg.C_380037 Daphnia pulex BDE_estExt_fgenesh1_pg.C_380037 I 0.730
DGIL_AUG5s5076g2t1 Acyrtosiphon pisum DGIL_AUG5s5076g2t1 I 0.725
AAH73435 Xenopus laevis AAH73435 I 0.724
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.721
PABPC4 Gallus gallus ENSGALG00000003800 I 0.717
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.716
CBN04295 Caenorhabditis brenneri CBN04295 I 0.713
Bm1_06880 Brugia malayi Bm1_06880 I 0.713
Bm1_16080 Brugia malayi Bm1_16080 I 0.713
LOAG_01058 Loa loa LOAG_01058 I 0.713
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.711
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.711
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.711
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.711
pab-1 Caenorhabditis elegans Y106G6H.2 I 0.709
e_gw1.115.135.1 Lottia gigantea e_gw1.115.135.1 I 0.709
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.708
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.708
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.708
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.708
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.708
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.708
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.708
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.708
CAA40721 Xenopus laevis CAA40721 I 0.708
P20965 Xenopus laevis P20965 I 0.708
AAH52100 Xenopus laevis AAH52100 I 0.708
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.708
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.708
LOC100054235 Equus caballus ENSECAG00000009396 I 0.708
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.708
PABPC4 Homo sapiens ENSG00000090621 D 0.708
DGIL_AUG5s1591g1t1 Acyrtosiphon pisum DGIL_AUG5s1591g1t1 I 0.707
DGIL_AUG5s9152g1t1 Acyrtosiphon pisum DGIL_AUG5s9152g1t1 I 0.707
CBG02207 Caenorhabditis briggsae CBG02207 N 0.706
XP_801795.2 Strongylocentrotus purpuratus XP_801795.2 I 0.706
XP_001177907.1 Strongylocentrotus purpuratus XP_001177907.1 I 0.706
AAH72110 Xenopus laevis AAH72110 I 0.704
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.704
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.704
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.704
AAA60936 Xenopus laevis AAA60936 I 0.704
Q6IP09 Xenopus laevis Q6IP09 I 0.704
Gm10110 Mus musculus ENSMUSG00000062093 I 0.704
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.704
AAI08463 Xenopus laevis AAI08463 I 0.704
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.704
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.704
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.704
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.704
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.701
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.701
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.701
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.701
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.701
PABPC1 Homo sapiens ENSG00000070756 D 0.701
pabpc4 Danio rerio ENSDARG00000059259 I 0.701
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.701
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.701
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.701
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.701
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.701
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.701
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.701
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.701
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.701
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.701