GH21052 (Drosophila grimshawi)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 FBgn0128514 T43530_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
pAbp
M130_0.6 		Drosophila melanogaster GAAAAHV RNAcompete
Ray et al.(2013)
RNCMPT00139 		0.894
PABPC4
M042_0.6 		Homo sapiens AAAAAAR RNAcompete
Ray et al.(2013)
RNCMPT00043 		0.719
PABPC1
M349_0.6 		Homo sapiens ACDAAYM SELEX
Cook et al.(2011)
950_7908267 		0.705
PABPC1
M275_0.6 		Homo sapiens AAAAA SELEX
Cook et al.(2011)
24_7908267 		0.705
PABPC1
M146_0.6 		Homo sapiens ARAAAAM RNAcompete
Ray et al.(2013)
RNCMPT00155 		0.705
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
FBpp0154958 RRM 4 74
FBpp0154958 RRM 92 161
FBpp0154958 RRM 185 255
FBpp0154958 RRM 289 358

Links

Other RRM family RBPs
Other Drosophila grimshawi RBPs

113 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GJ21671 Drosophila virilis FBgn0208790 I 0.965
GI18654 Drosophila mojavensis FBgn0141393 I 0.961
GK19652 Drosophila willistoni FBgn0221650 I 0.943
GL11548 Drosophila persimilis FBgn0149157 I 0.933
GA18673-RA Drosophila pseudoobscura FBgn0078673 I 0.929
GF12652 Drosophila ananassae FBgn0089688 I 0.922
GE11925 Drosophila yakuba FBgn0229707 I 0.911
GG21846 Drosophila erecta FBgn0114024 I 0.908
GD11341 Drosophila simulans FBgn0183090 I 0.908
GM21847 Drosophila sechellia FBgn0176724 I 0.904
pAbp Drosophila melanogaster FBgn0261619 D 0.904
AAEL010318 Aedes aegypti AAEL010318 I 0.823
CPIJ007980 Culex quinquefasciatus CPIJ007980 I 0.805
CpipJ_CPIJ007980 Culex pipiens CpipJ_CPIJ007980 I 0.805
amel4_ncbi_hmm1700 Apis mellifera amel4_ncbi_hmm1700 I 0.791
amel4_ncbi_hmm2036 Apis mellifera amel4_ncbi_hmm2036 I 0.791
ISCW014211 Ixodes scapularis ISCW014211 I 0.791
amel4_ncbi_hmm1364 Apis mellifera amel4_ncbi_hmm1364 I 0.791
nasonia_NCBI_hmm386743 Nasonia vitripennis nasonia_NCBI_hmm386743 I 0.787
nasonia_NCBI_hmm394743 Nasonia vitripennis nasonia_NCBI_hmm394743 I 0.787
nasonia_NCBI_hmm390743 Nasonia vitripennis nasonia_NCBI_hmm390743 I 0.787
BGIBMGA003469 Bombyx mori BGIBMGA003469 I 0.787
PHUM617090 Pediculus humanus PHUM617090 I 0.787
AGAP011092 Anopheles gambiae AGAP011092 I 0.784
BDE_estExt_fgenesh1_pg.C_380037 Daphnia pulex BDE_estExt_fgenesh1_pg.C_380037 I 0.770
DGIL_AUG5s5076g2t1 Acyrtosiphon pisum DGIL_AUG5s5076g2t1 I 0.745
PABPC4 Taeniopygia guttata ENSTGUG00000001266 I 0.732
XP_801795.2 Strongylocentrotus purpuratus XP_801795.2 I 0.730
e_gw1.115.135.1 Lottia gigantea e_gw1.115.135.1 I 0.730
estExt_Genewise1.C_1790010 Capitella teleta estExt_Genewise1.C_1790010 I 0.730
XP_001177907.1 Strongylocentrotus purpuratus XP_001177907.1 I 0.730
pabpc4 Danio rerio ENSDARG00000059259 I 0.729
ENSOANG00000010001 Ornithorhynchus anatinus ENSOANG00000010001 I 0.729
PABPC4 Oryzias latipes ENSORLG00000017479 I 0.729
Q8QGJ7_FUGRU Takifugu rubripes ENSTRUG00000005907 I 0.729
pabpc1 Xenopus tropicalis ENSXETG00000006635 I 0.729
PABPC4 Sus scrofa ENSSSCG00000003660 I 0.725
PABPC4 Homo sapiens ENSG00000090621 D 0.725
D4AC21_RAT Rattus norvegicus ENSRNOG00000015642 I 0.725
P20965 Xenopus laevis P20965 I 0.725
PABPC4 Cavia porcellus ENSCPOG00000009552 I 0.725
A6MKJ4_CALJA Callithrix jacchus ENSCJAG00000002512 I 0.725
AAH73435 Xenopus laevis AAH73435 I 0.725
PABPC4 Gasterosteus aculeatus ENSGACG00000007179 I 0.725
PABPC4 Gallus gallus ENSGALG00000003800 I 0.725
PABPC4 Macaca mulatta ENSMMUG00000007497 I 0.725
ENSPPYG00000001506 Pongo pygmaeus ENSPPYG00000001506 I 0.725
CAA40721 Xenopus laevis CAA40721 I 0.725
PABPC4 Pan troglodytes ENSPTRG00000000573 I 0.725
ENSMICG00000000431 Microcebus murinus ENSMICG00000000431 I 0.725
PABPC4 Gorilla gorilla ENSGGOG00000004002 I 0.725
PABPC4 Loxodonta africana ENSLAFG00000000151 I 0.725
PABPC4 Canis familiaris ENSCAFG00000003081 I 0.725
LOC100054235 Equus caballus ENSECAG00000009396 I 0.725
AAH52100 Xenopus laevis AAH52100 I 0.725
PABPC4 Tetraodon nigroviridis ENSTNIG00000016902 I 0.725
A4IFC3_BOVIN Bos taurus ENSBTAG00000017125 I 0.725
e_gw.313.40.1 Branchiostoma floridae e_gw.313.40.1 I 0.723
gw.1.65.1 Branchiostoma floridae gw.1.65.1 I 0.723
Gm10110 Mus musculus ENSMUSG00000062093 I 0.722
AAA60936 Xenopus laevis AAA60936 I 0.722
PABPC4 Ochotona princeps ENSOPRG00000011984 I 0.722
PABPC4 Oryctolagus cuniculus ENSOCUG00000000562 I 0.722
DGIL_AUG5s1591g1t1 Acyrtosiphon pisum DGIL_AUG5s1591g1t1 I 0.720
DGIL_AUG5s9152g1t1 Acyrtosiphon pisum DGIL_AUG5s9152g1t1 I 0.720
estExt_Genewise1.C_sca_1150143 Lottia gigantea estExt_Genewise1.C_sca_1150143 I 0.720
CBN04295 Caenorhabditis brenneri CBN04295 I 0.720
XM_001365232.1 Monodelphis domestica ENSMODG00000017657 I 0.719
Pabpc4 Mus musculus ENSMUSG00000011257 I 0.718
PABPC4 Erinaceus europaeus ENSEEUG00000002962 I 0.718
AAI08463 Xenopus laevis AAI08463 I 0.715
ENSOANG00000007307 Ornithorhynchus anatinus ENSOANG00000007307 I 0.715
Pabpc1 Mus musculus ENSMUSG00000022283 I 0.715
AAH72110 Xenopus laevis AAH72110 I 0.715
PABPC1 Taeniopygia guttata ENSTGUG00000012067 I 0.715
pabpc1a Danio rerio ENSDARG00000017219 I 0.715
Q6IP09 Xenopus laevis Q6IP09 I 0.715
ENSACAG00000016470 Anolis carolinensis ENSACAG00000016470 I 0.715
Pabpc1 Rattus norvegicus ENSRNOG00000008639 I 0.715
fgenesh1_pm.scaffold_278000002 Nematostella vectensis fgenesh1_pm.scaffold_278000002 I 0.713
PABPC3 Oryzias latipes ENSORLG00000002691 I 0.711
ENSPPYG00000018790 Pongo pygmaeus ENSPPYG00000018790 I 0.711
ENSTTRG00000004689 Tursiops truncatus ENSTTRG00000004689 I 0.711
ENSOPRG00000009667 Ochotona princeps ENSOPRG00000009667 I 0.711
PABPC3 Takifugu rubripes ENSTRUG00000011577 I 0.711
ENSSSCG00000006063 Sus scrofa ENSSSCG00000006063 I 0.711
ENSPVAG00000016640 Pteropus vampyrus ENSPVAG00000016640 I 0.711
LOC100413032 Callithrix jacchus ENSCJAG00000015833 I 0.711
PABPC1 Homo sapiens ENSG00000070756 D 0.711
ENSOCUG00000023935 Oryctolagus cuniculus ENSOCUG00000023935 I 0.711
ENSCAFG00000000567 Canis familiaris ENSCAFG00000000567 I 0.711
PABPC1 Macaca mulatta ENSMMUG00000017786 I 0.711
ENSLAFG00000013994 Loxodonta africana ENSLAFG00000013994 I 0.711
XR_030308.1 Monodelphis domestica ENSMODG00000006222 I 0.711
ENSOCUG00000004354 Oryctolagus cuniculus ENSOCUG00000004354 I 0.711
LOAG_01058 Loa loa LOAG_01058 I 0.709
CJA17800 Caenorhabditis japonica CJA17800 N 0.709
Bm1_16080 Brugia malayi Bm1_16080 I 0.709
Bm1_06880 Brugia malayi Bm1_06880 I 0.709
XR_023909.1 Pan troglodytes ENSPTRG00000020475 I 0.708
CBG02207 Caenorhabditis briggsae CBG02207 N 0.706
185682 Helobdella robusta 185682 I 0.706
XP_002156904.1 Hydra magnipapillata XP_002156904.1 I 0.706
XP_002156940.1 Hydra magnipapillata XP_002156940.1 I 0.706
pabpc1b Danio rerio ENSDARG00000021140 I 0.705
ENSGACG00000003771 Gasterosteus aculeatus ENSGACG00000003771 I 0.704
ENSTRUG00000003767 Takifugu rubripes ENSTRUG00000003767 I 0.704
PABPC3 Gasterosteus aculeatus ENSGACG00000003572 I 0.704
D3ZEY8_RAT Rattus norvegicus ENSRNOG00000028592 I 0.704
ENSTNIG00000009153 Tetraodon nigroviridis ENSTNIG00000009153 I 0.704
pab-1 Caenorhabditis elegans Y106G6H.2 I 0.702
ENSMICG00000016633 Microcebus murinus ENSMICG00000016633 I 0.701
Pabpc2 Mus musculus ENSMUSG00000051732 I 0.701