gw.406.24.1 (Branchiostoma floridae)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 gw.406.24.1 T53435_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
TIA1
M156_0.6 		Homo sapiens WUUUUUB RNAcompete
Ray et al.(2013)
RNCMPT00165 		0.776
TIA1
M075_0.6 		Homo sapiens UUUUUBK RNAcompete
Ray et al.(2013)
RNCMPT00077 		0.776
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
gw.406.24.1 RRM 7 74
gw.406.24.1 RRM 106 176
gw.406.24.1 RRM 216 280

Links

Other RRM family RBPs
Other Branchiostoma floridae RBPs

60 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
estExt_fgenesh2_pg.C_1430023 Branchiostoma floridae estExt_fgenesh2_pg.C_1430023 I 0.995
TIA1 Echinops telfairi ENSETEG00000010021 I 0.785
TIA1 Canis familiaris ENSCAFG00000003341 I 0.784
TIA1 Dasypus novemcinctus ENSDNOG00000016356 I 0.784
TIA1 Monodelphis domestica ENSMODG00000011515 I 0.784
Ame_R002705 Ailuropoda melanoleuca Ame_R002705 I 0.784
Q0VBZ6_BOVIN Bos taurus ENSBTAG00000019182 I 0.780
TIA1 Loxodonta africana ENSLAFG00000003463 I 0.780
tial1 Danio rerio ENSDARG00000009525 I 0.780
Tia1 Rattus norvegicus ENSRNOG00000016813 I 0.780
ENSACAG00000009648 Anolis carolinensis ENSACAG00000009648 I 0.780
TIA1 Meleagris gallopavo ENSMGAG00000003493 I 0.779
Q800W4_CHICK Gallus gallus ENSGALG00000013879 I 0.776
TIA1 Otolemur garnettii ENSOGAG00000010572 I 0.776
TIA1 Pteropus vampyrus ENSPVAG00000004846 I 0.776
TIA1 Tursiops truncatus ENSTTRG00000001195 I 0.776
TIA1 Pan troglodytes ENSPTRG00000023495 I 0.776
TIA1 Homo sapiens ENSG00000116001 D 0.776
TIA1 Oryctolagus cuniculus ENSOCUG00000011204 I 0.776
Tia1 Mus musculus ENSMUSG00000071337 I 0.776
TIA1 Macaca mulatta ENSMMUG00000001126 I 0.776
TIA1 Callithrix jacchus ENSCJAG00000019278 I 0.776
TIA1 Cavia porcellus ENSCPOG00000008327 I 0.776
TIAL1 Oryctolagus cuniculus ENSOCUG00000003783 I 0.775
TIAL1 Homo sapiens ENSG00000151923 D 0.771
TIAL1 Macaca mulatta ENSMMUG00000001472 I 0.771
ENSPPYG00000012326 Pongo pygmaeus ENSPPYG00000012326 I 0.771
Tial1 Mus musculus ENSMUSG00000030846 I 0.771
A1A4R7_BOVIN Bos taurus ENSBTAG00000004080 I 0.771
ENSSSCG00000010685 Sus scrofa ENSSSCG00000010685 I 0.771
TIAL1 Equus caballus ENSECAG00000009970 I 0.771
TIA1 Oryzias latipes ENSORLG00000002529 I 0.770
TIAL1 Gasterosteus aculeatus ENSGACG00000003365 I 0.767
TIA1 Takifugu rubripes ENSTRUG00000015136 I 0.766
TIA1 Tetraodon nigroviridis ENSTNIG00000011433 I 0.766
TIA1 Oryzias latipes ENSORLG00000015642 I 0.766
tia1 Xenopus tropicalis ENSXETG00000008514 I 0.761
tia1 Danio rerio ENSDARG00000052536 I 0.761
TIAL1 Anolis carolinensis ENSACAG00000016986 I 0.756
TIA1 Takifugu rubripes ENSTRUG00000005456 I 0.756
TIA1 Tetraodon nigroviridis ENSTNIG00000013470 I 0.756
TIA1 Gasterosteus aculeatus ENSGACG00000015800 I 0.756
TIAL1 Oryzias latipes ENSORLG00000013798 I 0.756
AAH80105 Xenopus laevis AAH80105 I 0.756
AAH77169 Xenopus laevis AAH77169 I 0.746
CAC95018 Xenopus laevis CAC95018 I 0.746
tia1l Danio rerio ENSDARG00000026476 I 0.741
TIA1 Taeniopygia guttata ENSTGUG00000017307 I 0.737
TIA1 Gasterosteus aculeatus ENSGACG00000013294 I 0.725
Tia1 Dipodomys ordii ENSDORG00000008601 I 0.722
TIAL1 Tarsius syrichta ENSTSYG00000004348 I 0.712
TIAL1 Pteropus vampyrus ENSPVAG00000017585 I 0.712
TIAL1 Monodelphis domestica ENSMODG00000008865 I 0.712
TIAL1 Canis familiaris ENSCAFG00000012171 I 0.712
ENSPPYG00000002703 Pongo pygmaeus ENSPPYG00000002703 I 0.712
TIAL1 Pan troglodytes ENSPTRG00000002996 I 0.712
TIAL1 Callithrix jacchus ENSCJAG00000019682 I 0.712
Q800W1_CHICK Gallus gallus ENSGALG00000009427 I 0.712
Tial1 Rattus norvegicus ENSRNOG00000020271 I 0.712
TIAL1 Procavia capensis ENSPCAG00000003192 I 0.707