TIA1 (Oryzias latipes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSORLG00000002529 T40096_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
TIA1
M156_0.6 		Homo sapiens WUUUUUB RNAcompete
Ray et al.(2013)
RNCMPT00165 		0.907
TIA1
M075_0.6 		Homo sapiens UUUUUBK RNAcompete
Ray et al.(2013)
RNCMPT00077 		0.907
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000003143 RRM 9 77
ENSORLP00000003143 RRM 109 179
ENSORLP00000003143 RRM 256 320
ENSORLP00000003146 RRM 10 78
ENSORLP00000003146 RRM 98 168
ENSORLP00000003146 RRM 206 270
ENSORLP00000003148 RRM 11 78
ENSORLP00000003148 RRM 98 168
ENSORLP00000003148 RRM 206 270

Links

Other RRM family RBPs
Other Oryzias latipes RBPs

69 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
TIA1 Gasterosteus aculeatus ENSGACG00000015800 I 0.990
TIA1 Tetraodon nigroviridis ENSTNIG00000013470 I 0.980
TIA1 Takifugu rubripes ENSTRUG00000005456 I 0.980
TIA1 Loxodonta africana ENSLAFG00000003463 I 0.912
TIA1 Monodelphis domestica ENSMODG00000011515 I 0.912
ENSACAG00000009648 Anolis carolinensis ENSACAG00000009648 I 0.912
tia1 Danio rerio ENSDARG00000052536 I 0.912
Q0VBZ6_BOVIN Bos taurus ENSBTAG00000019182 I 0.912
Ame_R002705 Ailuropoda melanoleuca Ame_R002705 I 0.912
TIA1 Dasypus novemcinctus ENSDNOG00000016356 I 0.912
TIA1 Canis familiaris ENSCAFG00000003341 I 0.912
TIA1 Cavia porcellus ENSCPOG00000008327 I 0.907
Q800W4_CHICK Gallus gallus ENSGALG00000013879 I 0.907
TIA1 Otolemur garnettii ENSOGAG00000010572 I 0.907
TIA1 Echinops telfairi ENSETEG00000010021 I 0.907
TIA1 Tursiops truncatus ENSTTRG00000001195 I 0.907
TIA1 Callithrix jacchus ENSCJAG00000019278 I 0.907
TIA1 Oryctolagus cuniculus ENSOCUG00000011204 I 0.907
TIA1 Macaca mulatta ENSMMUG00000001126 I 0.907
TIA1 Homo sapiens ENSG00000116001 D 0.907
TIA1 Pteropus vampyrus ENSPVAG00000004846 I 0.907
TIA1 Pan troglodytes ENSPTRG00000023495 I 0.907
TIA1 Meleagris gallopavo ENSMGAG00000003493 I 0.907
TIA1 Takifugu rubripes ENSTRUG00000015136 I 0.902
Tia1 Mus musculus ENSMUSG00000071337 I 0.902
TIA1 Tetraodon nigroviridis ENSTNIG00000011433 I 0.902
Tia1 Rattus norvegicus ENSRNOG00000016813 I 0.898
ENSPPYG00000012326 Pongo pygmaeus ENSPPYG00000012326 I 0.893
TIA1 Oryzias latipes ENSORLG00000015642 I 0.883
tia1 Xenopus tropicalis ENSXETG00000008514 I 0.883
AAH80105 Xenopus laevis AAH80105 I 0.878
CAC95018 Xenopus laevis CAC95018 I 0.873
AAH77169 Xenopus laevis AAH77169 I 0.873
TIA1 Taeniopygia guttata ENSTGUG00000017307 I 0.859
TIAL1 Equus caballus ENSECAG00000009970 I 0.854
TIAL1 Homo sapiens ENSG00000151923 D 0.854
Tial1 Mus musculus ENSMUSG00000030846 I 0.854
TIAL1 Macaca mulatta ENSMMUG00000001472 I 0.854
A1A4R7_BOVIN Bos taurus ENSBTAG00000004080 I 0.854
ENSSSCG00000010685 Sus scrofa ENSSSCG00000010685 I 0.854
TIAL1 Oryctolagus cuniculus ENSOCUG00000003783 I 0.853
Tia1 Dipodomys ordii ENSDORG00000008601 I 0.849
tial1 Danio rerio ENSDARG00000009525 I 0.849
TIA1 Gasterosteus aculeatus ENSGACG00000013294 I 0.848
tia1l Danio rerio ENSDARG00000026476 I 0.844
TIAL1 Anolis carolinensis ENSACAG00000016986 I 0.834
TIAL1 Gasterosteus aculeatus ENSGACG00000003365 I 0.816
ENSTBEG00000017228 Tupaia belangeri ENSTBEG00000017228 I 0.805
TIAL1 Oryzias latipes ENSORLG00000013798 I 0.795
Tial1 Rattus norvegicus ENSRNOG00000020271 I 0.788
ENSPPYG00000002703 Pongo pygmaeus ENSPPYG00000002703 I 0.788
TIAL1 Pan troglodytes ENSPTRG00000002996 I 0.788
TIAL1 Pteropus vampyrus ENSPVAG00000017585 I 0.788
TIAL1 Monodelphis domestica ENSMODG00000008865 I 0.788
TIAL1 Tarsius syrichta ENSTSYG00000004348 I 0.788
TIAL1 Canis familiaris ENSCAFG00000012171 I 0.788
TIAL1 Callithrix jacchus ENSCJAG00000019682 I 0.788
Q800W1_CHICK Gallus gallus ENSGALG00000009427 I 0.788
TIAL1 Procavia capensis ENSPCAG00000003192 I 0.784
TIA1 Sorex araneus ENSSARG00000001997 I 0.775
estExt_fgenesh2_pg.C_1430023 Branchiostoma floridae estExt_fgenesh2_pg.C_1430023 I 0.771
TIAL1 Vicugna pacos ENSVPAG00000001240 I 0.771
gw.406.24.1 Branchiostoma floridae gw.406.24.1 I 0.770
Tial1 Dipodomys ordii ENSDORG00000010683 I 0.752
TIAL1 Takifugu rubripes ENSTRUG00000017931 I 0.736
TIA1 Vicugna pacos ENSVPAG00000007449 I 0.732
TIAL1 Ornithorhynchus anatinus ENSOANG00000004896 I 0.730
TIAL1 Dasypus novemcinctus ENSDNOG00000009552 I 0.709