LjT41H24.20.nd (Lotus japonicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 LjT41H24.20.nd T57290_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LjT41H24.20.nd RRM 186 253
LjT41H24.20.nd RRM 283 341

Links

Other RRM family RBPs
Other Lotus japonicus RBPs

41 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
chr3.LjT02L14.110.nd Lotus japonicus chr3.LjT02L14.110.nd N 0.913
Glyma06g14030.1 Glycine max Glyma06g14030.1 N 0.803
Glyma04g40760.1 Glycine max Glyma04g40760.1 N 0.796
Medtr3g122880 Medicago truncatula Medtr3g122880 N 0.788
Glyma04g40750.1 Glycine max Glyma04g40750.1 N 0.788
B9IDI5_POPTR Populus trichocarpa POPTR_0015s00770 N 0.780
Glyma06g14050.1 Glycine max Glyma06g14050.1 N 0.774
Medtr3g122920 Medicago truncatula Medtr3g122920 N 0.766
POPTR_0012s02890 Populus trichocarpa POPTR_0012s02890 N 0.764
ppa006808m Prunus persica ppa006808m N 0.759
PK04894.1 Cannabis sativa PK04894.1 N 0.752
B9GIT2_POPTR Populus trichocarpa POPTR_0001s45290 N 0.748
MDP0000233630 Malus x domestica MDP0000233630 N 0.745
cassava45236.m1 Manihot esculenta cassava45236.m1 N 0.732
cassava43127.valid.m1 Manihot esculenta cassava43127.valid.m1 N 0.730
gw1.10.957.1 Selaginella moellendorfii gw1.10.957.1 N 0.730
gw1.29.636.1 Selaginella moellendorfii gw1.29.636.1 N 0.730
GSVIVG00038633001 Vitis vinifera GSVIVG00038633001 N 0.723
estExt_Genewise1.C_1960042 Physcomitrella patens estExt_Genewise1.C_1960042 N 0.723
e_gw1.62.48.1 Physcomitrella patens e_gw1.62.48.1 N 0.723
SB07G001560 Sorghum bicolor Sb07g001560 N 0.715
GSVIVG00019674001 Vitis vinifera GSVIVG00019674001 N 0.715
GRMZM2G173428 Zea mays GRMZM2G173428 N 0.715
BGIOSIBCE026288 Oryza indica BGIOSIBCE026288 N 0.715
LOC_Os08g02330 Oryza sativa LOC_Os08g02330 N 0.715
29485.m000140 Ricinus communis 29485.m000140 N 0.715
mgf012896m Mimulus guttatus mgf012896m N 0.715
mgf013366m Mimulus guttatus mgf013366m N 0.708
GRMZM2G069102 Zea mays GRMZM2G069102 N 0.708
cassava38064.valid.m1 Manihot esculenta cassava38064.valid.m1 N 0.708
XM_002893696.1 Arabidopsis lyrata fgenesh2_kg.1__3419__AT1G32790.2 N 0.708
30068.m002593 Ricinus communis 30068.m002593 N 0.708
CID11 Arabidopsis thaliana AT1G32790-TAIR-G N 0.708
cassava38063.valid.m1 Manihot esculenta cassava38063.valid.m1 N 0.708
PK12463.1 Cannabis sativa PK12463.1 N 0.708
cassava38065.valid.m1 Manihot esculenta cassava38065.valid.m1 N 0.708
GSVIVG00001961001 Vitis vinifera GSVIVG00001961001 N 0.701
cassava37978.valid.m1 Manihot esculenta cassava37978.valid.m1 N 0.701
cassava41363.m1 Manihot esculenta cassava41363.m1 N 0.701
cassava37979.valid.m1 Manihot esculenta cassava37979.valid.m1 N 0.701
cassava41364.m1 Manihot esculenta cassava41364.m1 N 0.701