B9GIT2_POPTR (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0001s45290 T45448_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0001s45290.1 RRM 173 240
POPTR_0001s45290.1 RRM 270 321

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

37 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava45236.m1 Manihot esculenta cassava45236.m1 N 0.833
B9IDI5_POPTR Populus trichocarpa POPTR_0015s00770 N 0.808
chr3.LjT02L14.110.nd Lotus japonicus chr3.LjT02L14.110.nd N 0.792
POPTR_0012s02890 Populus trichocarpa POPTR_0012s02890 N 0.783
XM_002872481.1 Arabidopsis lyrata fgenesh2_kg.6__3042__AT4G10610.1 N 0.766
ATRBP37 Arabidopsis thaliana AT4G10610-TAIR-G N 0.752
PK12463.1 Cannabis sativa PK12463.1 N 0.752
estExt_Genewise1.C_1960042 Physcomitrella patens estExt_Genewise1.C_1960042 N 0.752
GRMZM2G069102 Zea mays GRMZM2G069102 N 0.752
e_gw1.62.48.1 Physcomitrella patens e_gw1.62.48.1 N 0.752
GSVIVG00038633001 Vitis vinifera GSVIVG00038633001 N 0.752
LjT41H24.20.nd Lotus japonicus LjT41H24.20.nd N 0.748
BGIOSIBCE026288 Oryza indica BGIOSIBCE026288 N 0.745
LOC_Os08g02330 Oryza sativa LOC_Os08g02330 N 0.745
BRADI3G13740 Brachypodium distachyon BRADI3G13740 N 0.745
GRMZM2G173428 Zea mays GRMZM2G173428 N 0.745
30068.m002593 Ricinus communis 30068.m002593 N 0.745
SB07G001560 Sorghum bicolor Sb07g001560 N 0.745
cassava43127.valid.m1 Manihot esculenta cassava43127.valid.m1 N 0.745
GSVIVG00019674001 Vitis vinifera GSVIVG00019674001 N 0.737
PK04894.1 Cannabis sativa PK04894.1 N 0.737
mgf012896m Mimulus guttatus mgf012896m N 0.737
XM_002893696.1 Arabidopsis lyrata fgenesh2_kg.1__3419__AT1G32790.2 N 0.730
CID11 Arabidopsis thaliana AT1G32790-TAIR-G N 0.730
MDP0000155814 Malus x domestica MDP0000155814 N 0.726
gw1.29.636.1 Selaginella moellendorfii gw1.29.636.1 N 0.723
gw1.10.957.1 Selaginella moellendorfii gw1.10.957.1 N 0.723
ppa006808m Prunus persica ppa006808m N 0.723
Glyma04g40750.1 Glycine max Glyma04g40750.1 N 0.715
Glyma06g14050.1 Glycine max Glyma06g14050.1 N 0.715
Glyma06g14030.1 Glycine max Glyma06g14030.1 N 0.715
mgf013366m Mimulus guttatus mgf013366m N 0.715
MDP0000233630 Malus x domestica MDP0000233630 N 0.708
29485.m000140 Ricinus communis 29485.m000140 N 0.701
Cucsa.273320 Cucumis sativus Cucsa.273320 N 0.701
Medtr3g122880 Medicago truncatula Medtr3g122880 N 0.701
PDK_20s1621251g001 Phoenix dactylifera PDK_20s1621251g001 N 0.700