chr3.LjT02L14.110.nd (Lotus japonicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 chr3.LjT02L14.110.nd T55863_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
chr3.LjT02L14.110.nd RRM 33 100
chr3.LjT02L14.110.nd RRM 130 179

Links

Other RRM family RBPs
Other Lotus japonicus RBPs

38 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LjT41H24.20.nd Lotus japonicus LjT41H24.20.nd N 0.913
B9IDI5_POPTR Populus trichocarpa POPTR_0015s00770 N 0.825
POPTR_0012s02890 Populus trichocarpa POPTR_0012s02890 N 0.822
Glyma06g14030.1 Glycine max Glyma06g14030.1 N 0.796
B9GIT2_POPTR Populus trichocarpa POPTR_0001s45290 N 0.792
cassava45236.m1 Manihot esculenta cassava45236.m1 N 0.790
Glyma04g40760.1 Glycine max Glyma04g40760.1 N 0.788
Medtr3g122880 Medicago truncatula Medtr3g122880 N 0.781
Glyma04g40750.1 Glycine max Glyma04g40750.1 N 0.781
Glyma06g14050.1 Glycine max Glyma06g14050.1 N 0.766
Medtr3g122920 Medicago truncatula Medtr3g122920 N 0.759
ppa006808m Prunus persica ppa006808m N 0.752
MDP0000155814 Malus x domestica MDP0000155814 N 0.746
PK04894.1 Cannabis sativa PK04894.1 N 0.745
MDP0000233630 Malus x domestica MDP0000233630 N 0.737
gw1.10.957.1 Selaginella moellendorfii gw1.10.957.1 N 0.723
cassava43127.valid.m1 Manihot esculenta cassava43127.valid.m1 N 0.723
gw1.29.636.1 Selaginella moellendorfii gw1.29.636.1 N 0.723
e_gw1.62.48.1 Physcomitrella patens e_gw1.62.48.1 N 0.715
GSVIVG00038633001 Vitis vinifera GSVIVG00038633001 N 0.715
estExt_Genewise1.C_1960042 Physcomitrella patens estExt_Genewise1.C_1960042 N 0.715
SB07G001560 Sorghum bicolor Sb07g001560 N 0.708
GSVIVG00019674001 Vitis vinifera GSVIVG00019674001 N 0.708
GRMZM2G173428 Zea mays GRMZM2G173428 N 0.708
BGIOSIBCE026288 Oryza indica BGIOSIBCE026288 N 0.708
mgf012896m Mimulus guttatus mgf012896m N 0.708
LOC_Os08g02330 Oryza sativa LOC_Os08g02330 N 0.708
29485.m000140 Ricinus communis 29485.m000140 N 0.708
PDK_20s1621251g001 Phoenix dactylifera PDK_20s1621251g001 N 0.703
GRMZM2G069102 Zea mays GRMZM2G069102 N 0.701
mgf013366m Mimulus guttatus mgf013366m N 0.701
30068.m002593 Ricinus communis 30068.m002593 N 0.701
CID11 Arabidopsis thaliana AT1G32790-TAIR-G N 0.701
PK12463.1 Cannabis sativa PK12463.1 N 0.701
XM_002893696.1 Arabidopsis lyrata fgenesh2_kg.1__3419__AT1G32790.2 N 0.701
cassava38063.valid.m1 Manihot esculenta cassava38063.valid.m1 N 0.701
cassava38064.valid.m1 Manihot esculenta cassava38064.valid.m1 N 0.701
cassava38065.valid.m1 Manihot esculenta cassava38065.valid.m1 N 0.701