B9IDI5_POPTR (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0015s00770 T45662_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0015s00770.1 RRM 196 263
POPTR_0015s00770.1 RRM 293 344

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

45 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
POPTR_0012s02890 Populus trichocarpa POPTR_0012s02890 N 0.933
chr3.LjT02L14.110.nd Lotus japonicus chr3.LjT02L14.110.nd N 0.825
B9GIT2_POPTR Populus trichocarpa POPTR_0001s45290 N 0.808
cassava45236.m1 Manihot esculenta cassava45236.m1 N 0.800
LjT41H24.20.nd Lotus japonicus LjT41H24.20.nd N 0.780
cassava37978.valid.m1 Manihot esculenta cassava37978.valid.m1 N 0.766
cassava37979.valid.m1 Manihot esculenta cassava37979.valid.m1 N 0.766
29485.m000140 Ricinus communis 29485.m000140 N 0.766
cassava41364.m1 Manihot esculenta cassava41364.m1 N 0.766
cassava41363.m1 Manihot esculenta cassava41363.m1 N 0.766
cassava38063.valid.m1 Manihot esculenta cassava38063.valid.m1 N 0.759
cassava38064.valid.m1 Manihot esculenta cassava38064.valid.m1 N 0.759
cassava38065.valid.m1 Manihot esculenta cassava38065.valid.m1 N 0.759
GSVIVG00038633001 Vitis vinifera GSVIVG00038633001 N 0.752
Glyma04g40750.1 Glycine max Glyma04g40750.1 N 0.752
ppa006808m Prunus persica ppa006808m N 0.745
estExt_Genewise1.C_1960042 Physcomitrella patens estExt_Genewise1.C_1960042 N 0.745
PK12463.1 Cannabis sativa PK12463.1 N 0.745
cassava43127.valid.m1 Manihot esculenta cassava43127.valid.m1 N 0.745
e_gw1.62.48.1 Physcomitrella patens e_gw1.62.48.1 N 0.745
MDP0000155814 Malus x domestica MDP0000155814 N 0.742
Medtr3g122920 Medicago truncatula Medtr3g122920 N 0.737
LOC_Os08g02330 Oryza sativa LOC_Os08g02330 N 0.737
GSVIVG00019674001 Vitis vinifera GSVIVG00019674001 N 0.737
Glyma06g14050.1 Glycine max Glyma06g14050.1 N 0.737
BGIOSIBCE026288 Oryza indica BGIOSIBCE026288 N 0.737
Glyma04g40760.1 Glycine max Glyma04g40760.1 N 0.737
30068.m002593 Ricinus communis 30068.m002593 N 0.737
Medtr3g122880 Medicago truncatula Medtr3g122880 N 0.737
mgf012896m Mimulus guttatus mgf012896m N 0.737
GRMZM2G173428 Zea mays GRMZM2G173428 N 0.730
SB07G001560 Sorghum bicolor Sb07g001560 N 0.730
PK04894.1 Cannabis sativa PK04894.1 N 0.730
Glyma06g14030.1 Glycine max Glyma06g14030.1 N 0.730
mgf013366m Mimulus guttatus mgf013366m N 0.730
GRMZM2G069102 Zea mays GRMZM2G069102 N 0.723
gw1.29.636.1 Selaginella moellendorfii gw1.29.636.1 N 0.723
gw1.10.957.1 Selaginella moellendorfii gw1.10.957.1 N 0.723
MDP0000233630 Malus x domestica MDP0000233630 N 0.715
CID11 Arabidopsis thaliana AT1G32790-TAIR-G N 0.715
XM_002893696.1 Arabidopsis lyrata fgenesh2_kg.1__3419__AT1G32790.2 N 0.715
XM_002872481.1 Arabidopsis lyrata fgenesh2_kg.6__3042__AT4G10610.1 N 0.715
PDK_20s1621251g001 Phoenix dactylifera PDK_20s1621251g001 N 0.708
BRADI3G13740 Brachypodium distachyon BRADI3G13740 N 0.708
ATRBP37 Arabidopsis thaliana AT4G10610-TAIR-G N 0.708