Aqu1.221345 (Amphimedon queenslandica)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 Aqu1.221345 T04726_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ZFP36
M350_0.6 		Homo sapiens UUAUUUAWW SELEX
Cook et al.(2011)
951_12324455 		0.722
ZFP36
M269_0.6 		Homo sapiens UUAUUUAWW SELEX
Cook et al.(2011)
221_12324455 		0.722
ZFP36
M268_0.6 		Homo sapiens Sequence logo not available AUUUA RIP-chip
Cook et al.(2011)
194_18256032.1 		0.722
ZFP36
M267_0.6 		Homo sapiens Sequence logo not available UUAUUUAUU RIP-chip
Cook et al.(2011)
194_18256032 		0.722
ZFP36
M266_0.6 		Homo sapiens Sequence logo not available UUGUGS RIP-chip
Cook et al.(2011)
193_18367721.3 		0.722
ZFP36
M265_0.6 		Homo sapiens Sequence logo not available CUUGU RIP-chip
Cook et al.(2011)
193_18367721.2 		0.722
ZFP36
M264_0.6 		Homo sapiens Sequence logo not available HCYUBY RIP-chip
Cook et al.(2011)
193_18367721.1 		0.722
ZFP36
M263_0.6 		Homo sapiens Sequence logo not available AAUAA RIP-chip
Cook et al.(2011)
193_18367721 		0.722
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Aqu1.221345 CCCH ZF 73 99
Aqu1.221345 CCCH ZF 111 137

Links

Other CCCH ZF family RBPs
Other Amphimedon queenslandica RBPs

147 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
0300010273 Ostreococcus tauri 0300010273 I 0.704
153596 Helobdella robusta 153596 N 0.741
64152 Helobdella robusta 64152 N 0.741
AAD24207 Xenopus laevis AAD24207 I 0.722
AAD24208 Xenopus laevis AAD24208 I 0.759
AAD24209 Xenopus laevis AAD24209 I 0.778
AAEL002308 Aedes aegypti AAEL002308 I 0.778
AAH44086 Xenopus laevis AAH44086 I 0.778
AAH82435 Xenopus laevis AAH82435 I 0.722
AAH84197 Xenopus laevis AAH84197 I 0.759
AAH84221 Xenopus laevis AAH84221 I 0.778
AAI00163 Xenopus laevis AAI00163 I 0.759
AAI08849 Xenopus laevis AAI08849 I 0.722
AGAP010954 Anopheles gambiae AGAP010954 N 0.796
amel4_ncbi_hmm10964 Apis mellifera amel4_ncbi_hmm10964 I 0.759
Ame_R000168 Ailuropoda melanoleuca Ame_R000168 I 0.778
Ame_R004924 Ailuropoda melanoleuca Ame_R004924 I 0.759
Ame_R016002 Ailuropoda melanoleuca Ame_R016002 I 0.722
BAC54909 Xenopus laevis BAC54909 I 0.778
BGIBMGA008337 Bombyx mori BGIBMGA008337 I 0.759
CPIJ018734 Culex quinquefasciatus CPIJ018734 I 0.778
CpipJ_CPIJ018734 Culex pipiens CpipJ_CPIJ018734 I 0.778
DDB_G0285973 Dictyostelium discoideum DDB_G0285973 I 0.741
EFA80829.1 Polysphondylium pallidum EFA80829.1 I 0.722
EIN_295900 Entamoeba invadens EIN_295900 N 0.704
ENSACAG00000005547 Anolis carolinensis ENSACAG00000005547 I 0.759
ENSACAG00000009252 Anolis carolinensis ENSACAG00000009252 I 0.741
ZFP36L2 Anolis carolinensis ENSACAG00000014740 I 0.778
Q1JP65_BOVIN Bos taurus ENSBTAG00000003553 I 0.778
A7MB98_BOVIN Bos taurus ENSBTAG00000025434 I 0.759
ZFP36L2 Canis familiaris ENSCAFG00000002438 I 0.778
ZFP36L1 Canis familiaris ENSCAFG00000016497 I 0.759
Q4H2G7_CIOIN Ciona intestinalis ENSCING00000014446 I 0.741
LOC100397247 Callithrix jacchus ENSCJAG00000014156 I 0.722
LOC100386590 Callithrix jacchus ENSCJAG00000014571 I 0.778
LOC100405281 Callithrix jacchus ENSCJAG00000015116 I 0.759
ZFP36 Cavia porcellus ENSCPOG00000011363 I 0.722
ZFP36L2 Cavia porcellus ENSCPOG00000022038 I 0.778
ZFP36L1 Cavia porcellus ENSCPOG00000025078 I 0.759
ENSCSAVG00000002923 Ciona savignyi ENSCSAVG00000002923 I 0.741
zfp36l1a Danio rerio ENSDARG00000016154 I 0.759
zfp36l1b Danio rerio ENSDARG00000021443 I 0.815
zfp36l2 Danio rerio ENSDARG00000021806 I 0.759
CABZ01070258.1 Danio rerio ENSDARG00000040503 I 0.741
zgc:114130 Danio rerio ENSDARG00000040725 I 0.722
ZFP36 Danio rerio ENSDARG00000044395 I 0.778
ZFP36L1 Dasypus novemcinctus ENSDNOG00000005159 I 0.759
Zfp36l1 Dipodomys ordii ENSDORG00000008348 I 0.759
Zfp36 Dipodomys ordii ENSDORG00000013487 I 0.722
LOC100063597 Equus caballus ENSECAG00000018860 I 0.759
ZFP36L2 Felis catus ENSFCAG00000013462 N 0.722
ZFP36 Homo sapiens ENSG00000128016 D 0.722
ZFP36L2 Homo sapiens ENSG00000152518 I 0.778
ZFP36L1 Homo sapiens ENSG00000185650 I 0.759
ZFP36 Gasterosteus aculeatus ENSGACG00000008344 I 0.704
ENSGACG00000008351 Gasterosteus aculeatus ENSGACG00000008351 I 0.796
ZFP36L1 Gasterosteus aculeatus ENSGACG00000011271 I 0.759
ENSGACG00000013400 Gasterosteus aculeatus ENSGACG00000013400 I 0.741
ZFP36L2 Gorilla gorilla ENSGGOG00000001402 I 0.778
ZFP36 Gorilla gorilla ENSGGOG00000014399 I 0.722
ZFP36L2 Loxodonta africana ENSLAFG00000004265 I 0.778
ZFP36L1 Loxodonta africana ENSLAFG00000028594 I 0.759
ZFP36L1 Macropus eugenii ENSMEUG00000003070 I 0.759
ZFP36 Macropus eugenii ENSMEUG00000010317 I 0.722
ZFP36L2 Macropus eugenii ENSMEUG00000010649 I 0.778
ZFP36L2 Microcebus murinus ENSMICG00000010318 I 0.778
ZFP36 Myotis lucifugus ENSMLUG00000002942 I 0.722
ZFP36L2 Myotis lucifugus ENSMLUG00000015588 I 0.778
ZFP36L2 Monodelphis domestica ENSMODG00000000407 I 0.778
ZFP36 Monodelphis domestica ENSMODG00000013494 I 0.704
Zfp36l1 Mus musculus ENSMUSG00000021127 I 0.759
Zfp36 Mus musculus ENSMUSG00000044786 I 0.741
Zfp36l2 Mus musculus ENSMUSG00000045817 I 0.778
Zfp36l3 Mus musculus ENSMUSG00000059334 I 0.759
ZFP36L2 Ornithorhynchus anatinus ENSOANG00000002848 I 0.759
ZFP36L1 Oryctolagus cuniculus ENSOCUG00000003168 I 0.759
ZFP36 Oryctolagus cuniculus ENSOCUG00000003400 I 0.722
ENSORLG00000000589 Oryzias latipes ENSORLG00000000589 I 0.741
ENSORLG00000008378 Oryzias latipes ENSORLG00000008378 I 0.778
ZFP36L1 Oryzias latipes ENSORLG00000011106 I 0.759
ZFP36L1 Procavia capensis ENSPCAG00000005383 I 0.759
ZFP36L2 Procavia capensis ENSPCAG00000010765 I 0.759
ENSPPYG00000005933 Pongo pygmaeus ENSPPYG00000005933 I 0.759
ENSPPYG00000010577 Pongo pygmaeus ENSPPYG00000010577 I 0.722
ENSPPYG00000012458 Pongo pygmaeus ENSPPYG00000012458 I 0.778
ZFP36 Pan troglodytes ENSPTRG00000010968 I 0.722
ZFP36L2 Pan troglodytes ENSPTRG00000011870 I 0.778
XR_022888.1 Pan troglodytes ENSPTRG00000030712 I 0.759
ZFP36 Pteropus vampyrus ENSPVAG00000011124 I 0.722
ZFP36L1 Pteropus vampyrus ENSPVAG00000011686 I 0.759
Zfp36l2 Rattus norvegicus ENSRNOG00000005067 I 0.778
Zfp36 Rattus norvegicus ENSRNOG00000019673 I 0.741
Zfp36l3 Rattus norvegicus ENSRNOG00000029788 I 0.778
TISB_RAT Rattus norvegicus ENSRNOG00000030024 I 0.759
ZFP36L1 Sus scrofa ENSSSCG00000002302 I 0.759
ENSSSCG00000008460 Sus scrofa ENSSSCG00000008460 I 0.778
ZFP36L2 Sus scrofa ENSSSCG00000008461 I 0.778
ZFP36 Sus scrofa ENSSSCG00000010708 I 0.722
ZFP36L1 Spermophilus tridecemlineatus ENSSTOG00000009758 I 0.759
ZFP36 Tupaia belangeri ENSTBEG00000005948 I 0.722
ZFP36L2 Tupaia belangeri ENSTBEG00000012370 I 0.778
ZFP36L1 Taeniopygia guttata ENSTGUG00000011494 I 0.778
ZFP36 Tetraodon nigroviridis ENSTNIG00000000183 I 0.796
ZFP36L1 Tetraodon nigroviridis ENSTNIG00000002277 I 0.778
ZFP36L2 Tetraodon nigroviridis ENSTNIG00000017103 I 0.759
ENSTNIG00000019802 Tetraodon nigroviridis ENSTNIG00000019802 I 0.759
ZFP36 Takifugu rubripes ENSTRUG00000002023 I 0.704
ENSTRUG00000003178 Takifugu rubripes ENSTRUG00000003178 I 0.741
ZFP36L2 Takifugu rubripes ENSTRUG00000006923 I 0.759
ZFP36L1 Takifugu rubripes ENSTRUG00000012295 I 0.759
ZFP36L1 Tarsius syrichta ENSTSYG00000009284 I 0.759
ZFP36L1 Tursiops truncatus ENSTTRG00000003475 I 0.759
ZFP36 Tursiops truncatus ENSTTRG00000003564 I 0.722
ZFP36L2 Tursiops truncatus ENSTTRG00000006356 I 0.778
zfp36 Xenopus tropicalis ENSXETG00000002899 I 0.722
zfp36l2 Xenopus tropicalis ENSXETG00000009274 I 0.778
zfp36l1 Xenopus tropicalis ENSXETG00000016987 I 0.759
estExt_fgenesh2_pg.C_680108 Branchiostoma floridae estExt_fgenesh2_pg.C_680108 I 0.759
estExt_fgeneshDP_kg.C_230001 Dictyostelium purpureum estExt_fgeneshDP_kg.C_230001 I 0.704
e_gw.346.37.1 Nematostella vectensis e_gw.346.37.1 I 0.759
e_gw1.40.110.1 Trichoplax adhaerens e_gw1.40.110.1 I 0.741
Tis11 Drosophila melanogaster FBgn0011837 N 0.759
GA17935-RA Drosophila pseudoobscura FBgn0077944 N 0.759
GF21384 Drosophila ananassae FBgn0098386 N 0.759
GG17735 Drosophila erecta FBgn0109957 N 0.759
GH17894 Drosophila grimshawi FBgn0125362 N 0.778
GI21684 Drosophila mojavensis FBgn0144414 N 0.778
GL13141 Drosophila persimilis FBgn0150747 N 0.759
GM11580 Drosophila sechellia FBgn0166523 N 0.759
GJ15863 Drosophila virilis FBgn0203050 N 0.778
GK25600 Drosophila willistoni FBgn0227559 N 0.778
GE17025 Drosophila yakuba FBgn0234511 N 0.759
fgeneshCV_pg.C_scaffold_14000116 Chlorella vulgaris fgeneshCV_pg.C_scaffold_14000116 I 0.722
gw1.3.668.1 Ostreococcus RCC809 gw1.3.668.1 I 0.704
gw1.30.59.1 Lottia gigantea gw1.30.59.1 N 0.759
gw1.42.93.1 Daphnia pulex gw1.42.93.1 N 0.759
gw1.534.24.1 Capitella teleta gw1.534.24.1 I 0.778
gwEuk.3.753.1 Ostreococcus lucimarinus gwEuk.3.753.1 I 0.704
nasonia_NCBI_hmm9264 Nasonia vitripennis nasonia_NCBI_hmm9264 I 0.741
PTSG_01604 Salpingoeca rosetta PTSG_01604 N 0.741
Q7ZXW9 Xenopus laevis Q7ZXW9 I 0.778
Q805B4 Xenopus laevis Q805B4 I 0.778
XP_001175665.1 Strongylocentrotus purpuratus XP_001175665.1 I 0.778
XP_001175810.1 Strongylocentrotus purpuratus XP_001175810.1 I 0.778
XP_001178437.1 Strongylocentrotus purpuratus XP_001178437.1 I 0.778
XP_002159721.1 Hydra magnipapillata XP_002159721.1 N 0.722
XP_782811.1 Strongylocentrotus purpuratus XP_782811.1 I 0.778