khsrp (Xenopus tropicalis)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 ENSXETG00000021862 T19774_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
KHSRP
M340_0.6 		Homo sapiens Sequence logo not available UwUAUUUw RIP-chip
Cook et al.(2011)
906_17437629.1 		0.837
KHSRP
M339_0.6 		Homo sapiens Sequence logo not available UAUUUAUw RIP-chip
Cook et al.(2011)
906_17437629 		0.837
KHSRP
M342_0.6 		Homo sapiens Sequence logo not available CnsCyUCC RIP-chip
Cook et al.(2011)
906_17437629.3 		0.837
KHSRP
M341_0.6 		Homo sapiens Sequence logo not available nUGUrUrU RIP-chip
Cook et al.(2011)
906_17437629.2 		0.837
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSXETP00000047312 KH 71 133
ENSXETP00000047312 KH 184 223
ENSXETP00000047312 KH 252 314
ENSXETP00000047312 KH 353 418

Links

Other KH family RBPs
Other Xenopus tropicalis RBPs

37 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAI61696 Xenopus laevis AAI61696 I 0.891
AAI69923 Xenopus laevis AAI69923 I 0.879
AAN77160 Xenopus laevis AAN77160 I 0.879
Ame_R016412 Ailuropoda melanoleuca Ame_R016412 I 0.837
KHSRP Anolis carolinensis ENSACAG00000015398 I 0.840
LOC505564 Bos taurus ENSBTAG00000021018 I 0.837
KHSRP Canis familiaris ENSCAFG00000018667 I 0.837
KHSRP Callithrix jacchus ENSCJAG00000016627 I 0.837
KHSRP Cavia porcellus ENSCPOG00000005140 I 0.837
KHSRP Danio rerio ENSDARG00000026489 I 0.802
KHSRP Dasypus novemcinctus ENSDNOG00000009590 I 0.759
Khsrp Dipodomys ordii ENSDORG00000002447 I 0.833
LOC100065608 Equus caballus ENSECAG00000018305 I 0.837
KHSRP Echinops telfairi ENSETEG00000004793 I 0.914
KHSRP Felis catus ENSFCAG00000003731 I 0.837
KHSRP Homo sapiens ENSG00000088247 D 0.837
KHSRP Gasterosteus aculeatus ENSGACG00000012422 I 0.767
KHSRP Gasterosteus aculeatus ENSGACG00000018990 I 0.759
KHSRP Gorilla gorilla ENSGGOG00000007028 I 0.837
KHSRP Loxodonta africana ENSLAFG00000002426 I 0.833
KHSRP Macropus eugenii ENSMEUG00000016601 I 0.790
KHSRP Microcebus murinus ENSMICG00000007863 I 0.833
KHSRP Macaca mulatta ENSMMUG00000005597 I 0.837
KHSRP Monodelphis domestica ENSMODG00000001952 I 0.774
Khsrp Mus musculus ENSMUSG00000007670 I 0.837
KHSRP Ornithorhynchus anatinus ENSOANG00000000261 I 0.729
KHSRP Ochotona princeps ENSOPRG00000010594 I 0.833
KHSRP Oryzias latipes ENSORLG00000011882 I 0.712
ENSPPYG00000009454 Pongo pygmaeus ENSPPYG00000009454 I 0.837
ENSPPYG00000019172 Pongo pygmaeus ENSPPYG00000019172 I 0.740
KHSRP Pan troglodytes ENSPTRG00000010364 I 0.837
KHSRP Pteropus vampyrus ENSPVAG00000007251 I 0.837
KHSRP Sus scrofa ENSSSCG00000013538 I 0.837
KHSRP Spermophilus tridecemlineatus ENSSTOG00000002371 I 0.837
KHSRP Tetraodon nigroviridis ENSTNIG00000014067 I 0.724
KHSRP Takifugu rubripes ENSTRUG00000010395 I 0.732
KHSRP Tursiops truncatus ENSTTRG00000010390 I 0.837