Cucsa.162240 (Cucumis sativus)
RanBP ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00641 (zf-RanBP) IPR001876 Cucsa.162240 T27345_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.162240.1 RanBP ZF 63 92
Cucsa.162240.1 RanBP ZF 118 149
Cucsa.162240.1 RanBP ZF 177 208

Links

Other RanBP ZF family RBPs
Other Cucumis sativus RBPs

38 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29841.m002811 Ricinus communis 29841.m002811 N 0.798
29848.m004659 Ricinus communis 29848.m004659 N 0.851
AT3G15680 Arabidopsis thaliana AT3G15680-TAIR-G N 0.840
AT5G25490 Arabidopsis thaliana AT5G25490-TAIR-G N 0.787
BGIOSIBCE006059 Oryza indica BGIOSIBCE006059 N 0.713
BRADI3G07610 Brachypodium distachyon BRADI3G07610 N 0.798
cassava20678.m1 Manihot esculenta cassava20678.m1 N 0.766
cassava25022.valid.m1 Manihot esculenta cassava25022.valid.m1 N 0.787
cassava25023.valid.m1 Manihot esculenta cassava25023.valid.m1 N 0.787
cassava36675.valid.m1 Manihot esculenta cassava36675.valid.m1 N 0.798
cassava8165.valid.m1 Manihot esculenta cassava8165.valid.m1 N 0.840
chr1.CM0442.230.nd Lotus japonicus chr1.CM0442.230.nd N 0.819
Cucsa.096580 Cucumis sativus Cucsa.096580 N 0.851
Cucsa.105250 Cucumis sativus Cucsa.105250 N 0.798
XM_002882911.1 Arabidopsis lyrata fgenesh2_kg.3__1723__AT3G15680.1 N 0.851
XM_002872121.1 Arabidopsis lyrata fgenesh2_kg.6__2541__AT5G25490.1 N 0.798
Glyma04g07270.1 Glycine max Glyma04g07270.1 N 0.840
Glyma06g07350.1 Glycine max Glyma06g07350.1 N 0.840
Glyma07g03620.1 Glycine max Glyma07g03620.1 N 0.830
Glyma08g22470.1 Glycine max Glyma08g22470.1 N 0.830
GRMZM2G094353 Zea mays GRMZM2G094353 N 0.766
GRMZM2G116079 Zea mays GRMZM2G116079 N 0.777
GRMZM2G404897 Zea mays GRMZM2G404897 N 0.702
GSVIVG00017252001 Vitis vinifera GSVIVG00017252001 N 0.840
GSVIVG00035819001 Vitis vinifera GSVIVG00035819001 N 0.862
LOC_Os02g10920 Oryza sativa LOC_Os02g10920 N 0.787
LOC_Os06g04920 Oryza sativa LOC_Os06g04920 N 0.702
MDP0000240686 Malus x domestica MDP0000240686 N 0.840
MDP0000269288 Malus x domestica MDP0000269288 N 0.883
MDP0000876872 Malus x domestica MDP0000876872 N 0.883
Medtr3g136630 Medicago truncatula Medtr3g136630 N 0.809
A9PB85_POPTR Populus trichocarpa POPTR_0001s17280 N 0.830
B9GWD5_POPTR Populus trichocarpa POPTR_0003s05990 N 0.830
A9P992_POPTR Populus trichocarpa POPTR_0006s26750 N 0.851
B9IKV1_POPTR Populus trichocarpa POPTR_0018s01490 N 0.851
ppa012687m Prunus persica ppa012687m N 0.851
ppa012737m Prunus persica ppa012737m N 0.862
Sb04g007110 Sorghum bicolor Sb04g007110 N 0.787