chr1.CM0442.230.nd (Lotus japonicus)
RanBP ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00641 (zf-RanBP) IPR001876 chr1.CM0442.230.nd T27726_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
chr1.CM0442.230.nd RanBP ZF 3 32
chr1.CM0442.230.nd RanBP ZF 71 102
chr1.CM0442.230.nd RanBP ZF 131 162

Links

Other RanBP ZF family RBPs
Other Lotus japonicus RBPs

36 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29841.m002811 Ricinus communis 29841.m002811 N 0.766
29848.m004659 Ricinus communis 29848.m004659 N 0.830
AT3G15680 Arabidopsis thaliana AT3G15680-TAIR-G N 0.809
AT5G25490 Arabidopsis thaliana AT5G25490-TAIR-G N 0.787
BGIOSIBCE006059 Oryza indica BGIOSIBCE006059 N 0.713
BRADI3G07610 Brachypodium distachyon BRADI3G07610 N 0.766
cassava20678.m1 Manihot esculenta cassava20678.m1 N 0.766
cassava25022.valid.m1 Manihot esculenta cassava25022.valid.m1 N 0.766
cassava25023.valid.m1 Manihot esculenta cassava25023.valid.m1 N 0.766
cassava36675.valid.m1 Manihot esculenta cassava36675.valid.m1 N 0.755
cassava8165.valid.m1 Manihot esculenta cassava8165.valid.m1 N 0.840
Cucsa.096580 Cucumis sativus Cucsa.096580 N 0.862
Cucsa.105250 Cucumis sativus Cucsa.105250 N 0.777
Cucsa.162240 Cucumis sativus Cucsa.162240 N 0.819
XM_002882911.1 Arabidopsis lyrata fgenesh2_kg.3__1723__AT3G15680.1 N 0.787
XM_002872121.1 Arabidopsis lyrata fgenesh2_kg.6__2541__AT5G25490.1 N 0.787
Glyma04g07270.1 Glycine max Glyma04g07270.1 N 0.936
Glyma06g07350.1 Glycine max Glyma06g07350.1 N 0.936
Glyma07g03620.1 Glycine max Glyma07g03620.1 N 0.809
Glyma08g22470.1 Glycine max Glyma08g22470.1 N 0.819
GRMZM2G094353 Zea mays GRMZM2G094353 N 0.755
GRMZM2G116079 Zea mays GRMZM2G116079 N 0.766
GSVIVG00017252001 Vitis vinifera GSVIVG00017252001 N 0.830
GSVIVG00035819001 Vitis vinifera GSVIVG00035819001 N 0.830
LOC_Os02g10920 Oryza sativa LOC_Os02g10920 N 0.777
MDP0000240686 Malus x domestica MDP0000240686 N 0.819
MDP0000269288 Malus x domestica MDP0000269288 N 0.809
MDP0000876872 Malus x domestica MDP0000876872 N 0.809
Medtr3g136630 Medicago truncatula Medtr3g136630 N 0.883
A9PB85_POPTR Populus trichocarpa POPTR_0001s17280 N 0.787
B9GWD5_POPTR Populus trichocarpa POPTR_0003s05990 N 0.809
A9P992_POPTR Populus trichocarpa POPTR_0006s26750 N 0.819
B9IKV1_POPTR Populus trichocarpa POPTR_0018s01490 N 0.830
ppa012687m Prunus persica ppa012687m N 0.809
ppa012737m Prunus persica ppa012737m N 0.809
Sb04g007110 Sorghum bicolor Sb04g007110 N 0.766