MDP0000269288 (Malus x domestica)
RanBP ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00641 (zf-RanBP) IPR001876 MDP0000269288 T27820_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000269288 RanBP ZF 3 32
MDP0000269288 RanBP ZF 61 92
MDP0000269288 RanBP ZF 128 159

Links

Other RanBP ZF family RBPs
Other Malus x domestica RBPs

39 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29841.m002811 Ricinus communis 29841.m002811 N 0.840
29848.m004659 Ricinus communis 29848.m004659 N 0.883
AT3G15680 Arabidopsis thaliana AT3G15680-TAIR-G N 0.872
AT5G25490 Arabidopsis thaliana AT5G25490-TAIR-G N 0.809
BGIOSIBCE006059 Oryza indica BGIOSIBCE006059 N 0.713
BRADI3G07610 Brachypodium distachyon BRADI3G07610 N 0.787
cassava20678.m1 Manihot esculenta cassava20678.m1 N 0.798
cassava25022.valid.m1 Manihot esculenta cassava25022.valid.m1 N 0.809
cassava25023.valid.m1 Manihot esculenta cassava25023.valid.m1 N 0.809
cassava36675.valid.m1 Manihot esculenta cassava36675.valid.m1 N 0.819
cassava8165.valid.m1 Manihot esculenta cassava8165.valid.m1 N 0.894
chr1.CM0442.230.nd Lotus japonicus chr1.CM0442.230.nd N 0.809
Cucsa.096580 Cucumis sativus Cucsa.096580 N 0.883
Cucsa.105250 Cucumis sativus Cucsa.105250 N 0.798
Cucsa.162240 Cucumis sativus Cucsa.162240 N 0.883
XM_002882911.1 Arabidopsis lyrata fgenesh2_kg.3__1723__AT3G15680.1 N 0.883
XM_002872121.1 Arabidopsis lyrata fgenesh2_kg.6__2541__AT5G25490.1 N 0.819
Glyma04g07270.1 Glycine max Glyma04g07270.1 N 0.872
Glyma06g07350.1 Glycine max Glyma06g07350.1 N 0.872
Glyma07g03620.1 Glycine max Glyma07g03620.1 N 0.851
Glyma08g22470.1 Glycine max Glyma08g22470.1 N 0.840
GRMZM2G094353 Zea mays GRMZM2G094353 N 0.755
GRMZM2G116079 Zea mays GRMZM2G116079 N 0.777
GRMZM2G404897 Zea mays GRMZM2G404897 N 0.713
GSVIVG00017252001 Vitis vinifera GSVIVG00017252001 N 0.872
GSVIVG00035819001 Vitis vinifera GSVIVG00035819001 N 0.872
LOC_Os02g10920 Oryza sativa LOC_Os02g10920 N 0.787
LOC_Os06g04920 Oryza sativa LOC_Os06g04920 N 0.713
MDP0000240686 Malus x domestica MDP0000240686 N 0.904
MDP0000876872 Malus x domestica MDP0000876872 N 0.947
Medtr3g136630 Medicago truncatula Medtr3g136630 N 0.830
A9PB85_POPTR Populus trichocarpa POPTR_0001s17280 N 0.862
B9GWD5_POPTR Populus trichocarpa POPTR_0003s05990 N 0.862
A9P992_POPTR Populus trichocarpa POPTR_0006s26750 N 0.883
B9IKV1_POPTR Populus trichocarpa POPTR_0018s01490 N 0.883
ppa012687m Prunus persica ppa012687m N 0.894
ppa012737m Prunus persica ppa012737m N 0.947
Sb04g007110 Sorghum bicolor Sb04g007110 N 0.777
SB10G002790 Sorghum bicolor Sb10g002790 N 0.702