RALYL (Choloepus hoffmanni)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCHOG00000013228 T35340_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPC
M025_0.6 		Homo sapiens HUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00025 		0.812
RALY
M150_0.6 		Homo sapiens UUUUUUB RNAcompete
Ray et al.(2013)
RNCMPT00159 		0.797
HNRNPCL1
M158_0.6 		Homo sapiens HUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00167 		0.750
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCHOP00000011719 RRM 23 86

Links

Other RRM family RBPs
Other Choloepus hoffmanni RBPs

129 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAA60937 Xenopus laevis AAA60937 I 0.781
AAH41534 Xenopus laevis AAH41534 I 0.797
AAH71084 Xenopus laevis AAH71084 I 0.781
Ame_R004237 Ailuropoda melanoleuca Ame_R004237 I 0.797
Ame_R004769 Ailuropoda melanoleuca Ame_R004769 I 0.969
Ame_R016471 Ailuropoda melanoleuca Ame_R016471 I 0.812
ENSACAG00000003296 Anolis carolinensis ENSACAG00000003296 I 0.812
RALY Anolis carolinensis ENSACAG00000008983 I 0.797
ENSACAG00000013880 Anolis carolinensis ENSACAG00000013880 I 0.953
Q3SX47_BOVIN Bos taurus ENSBTAG00000011396 I 0.812
Q3T0Y6_BOVIN Bos taurus ENSBTAG00000016524 I 0.797
ENSCAFG00000005504 Canis familiaris ENSCAFG00000005504 I 0.812
RALY Canis familiaris ENSCAFG00000007490 I 0.797
ENSCAFG00000025329 Canis familiaris ENSCAFG00000025329 I 0.969
RALY Choloepus hoffmanni ENSCHOG00000000266 I 0.797
LOC100400868 Callithrix jacchus ENSCJAG00000009033 I 0.812
ENSCJAG00000009354 Callithrix jacchus ENSCJAG00000009354 I 0.750
ENSCJAG00000009449 Callithrix jacchus ENSCJAG00000009449 I 0.781
LOC100401730 Callithrix jacchus ENSCJAG00000018361 I 0.797
RALY Cavia porcellus ENSCPOG00000000309 I 0.797
ENSCPOG00000001474 Cavia porcellus ENSCPOG00000001474 I 0.797
ENSCPOG00000023770 Cavia porcellus ENSCPOG00000023770 I 0.797
zgc:55733 Danio rerio ENSDARG00000022579 I 0.766
zgc:55701 Danio rerio ENSDARG00000053810 I 0.734
raly Danio rerio ENSDARG00000059972 I 0.781
ENSDNOG00000003161 Dasypus novemcinctus ENSDNOG00000003161 I 0.812
RALY Dasypus novemcinctus ENSDNOG00000003227 I 0.797
RALYL Dasypus novemcinctus ENSDNOG00000005799 I 0.969
Ralyl Dipodomys ordii ENSDORG00000003721 I 0.984
Raly Dipodomys ordii ENSDORG00000013400 I 0.797
LOC100054239 Equus caballus ENSECAG00000012357 I 0.797
LOC100059269 Equus caballus ENSECAG00000017645 I 0.812
RALY Erinaceus europaeus ENSEEUG00000005356 I 0.781
RALYL Erinaceus europaeus ENSEEUG00000007202 I 0.984
HNRNPC Erinaceus europaeus ENSEEUG00000007472 I 0.812
ENSETEG00000001919 Echinops telfairi ENSETEG00000001919 I 0.781
RALYL Echinops telfairi ENSETEG00000014028 I 0.953
HNRNPC Homo sapiens ENSG00000092199 D 0.812
RALY Homo sapiens ENSG00000125970 D 0.797
HNRNPCL1 Homo sapiens ENSG00000179172 D 0.750
RALY Gasterosteus aculeatus ENSGACG00000003636 I 0.750
RALYL Gasterosteus aculeatus ENSGACG00000004991 I 0.891
ENSGACG00000017772 Gasterosteus aculeatus ENSGACG00000017772 I 0.734
ENSGACG00000018932 Gasterosteus aculeatus ENSGACG00000018932 I 0.719
RALY Gallus gallus ENSGALG00000002054 I 0.812
LOC770541 Gallus gallus ENSGALG00000015797 I 0.953
ENSGGOG00000003521 Gorilla gorilla ENSGGOG00000003521 I 0.750
RALY Gorilla gorilla ENSGGOG00000022709 I 0.797
HNRNPC Gorilla gorilla ENSGGOG00000023015 I 0.812
ENSGGOG00000026816 Gorilla gorilla ENSGGOG00000026816 I 0.719
RALY Loxodonta africana ENSLAFG00000000321 I 0.797
ENSLAFG00000009341 Loxodonta africana ENSLAFG00000009341 I 0.812
HNRNPC Macropus eugenii ENSMEUG00000010928 I 0.812
RALY Meleagris gallopavo ENSMGAG00000002214 I 0.812
RALYL Microcebus murinus ENSMICG00000005558 I 0.984
RALY Myotis lucifugus ENSMLUG00000005330 I 0.797
HNRNPC Myotis lucifugus ENSMLUG00000007853 I 0.812
RALYL Myotis lucifugus ENSMLUG00000015286 I 0.984
XM_001095481.1 Macaca mulatta ENSMMUG00000003920 I 0.812
HNRNPC Macaca mulatta ENSMMUG00000014809 I 0.812
RALY Macaca mulatta ENSMMUG00000018093 I 0.797
XP_001109022.1 Macaca mulatta ENSMMUG00000018813 I 0.828
RALYL Macaca mulatta ENSMMUG00000031878 I 1.000
XM_001381335.1 Monodelphis domestica ENSMODG00000002819 I 0.812
XM_001368850.1 Monodelphis domestica ENSMODG00000006606 I 0.812
ENSMODG00000017619 Monodelphis domestica ENSMODG00000017619 I 0.750
Raly Mus musculus ENSMUSG00000027593 I 0.797
Ralyl Mus musculus ENSMUSG00000039717 I 1.000
Hnrnpc Mus musculus ENSMUSG00000060373 I 0.812
ENSOANG00000015707 Ornithorhynchus anatinus ENSOANG00000015707 I 0.812
HNRPC_RABIT Oryctolagus cuniculus ENSOCUG00000000339 I 0.812
RALY Oryctolagus cuniculus ENSOCUG00000000477 I 0.781
ENSOCUG00000008851 Oryctolagus cuniculus ENSOCUG00000008851 I 0.797
ENSOCUG00000013026 Oryctolagus cuniculus ENSOCUG00000013026 I 0.812
HNRPC_RABIT Oryctolagus cuniculus ENSOCUG00000015029 I 0.812
HNRNPC Otolemur garnettii ENSOGAG00000012543 I 0.812
ENSOPRG00000002800 Ochotona princeps ENSOPRG00000002800 I 0.797
RALY Ochotona princeps ENSOPRG00000008423 I 0.766
ENSORLG00000003144 Oryzias latipes ENSORLG00000003144 I 0.797
ENSORLG00000009999 Oryzias latipes ENSORLG00000009999 I 0.766
RALYL Oryzias latipes ENSORLG00000012719 I 0.875
RALYL Oryzias latipes ENSORLG00000017934 I 0.891
HNRNPCL1 Procavia capensis ENSPCAG00000003025 I 0.750
RALY Procavia capensis ENSPCAG00000016867 I 0.812
ENSPPYG00000001860 Pongo pygmaeus ENSPPYG00000001860 I 0.766
ENSPPYG00000005593 Pongo pygmaeus ENSPPYG00000005593 I 0.812
ENSPPYG00000010932 Pongo pygmaeus ENSPPYG00000010932 I 0.797
ENSPPYG00000018710 Pongo pygmaeus ENSPPYG00000018710 I 1.000
XR_022011.1 Pan troglodytes ENSPTRG00000006118 I 0.812
RALY Pan troglodytes ENSPTRG00000013410 I 0.797
RALYL Pan troglodytes ENSPTRG00000020381 I 1.000
XM_001153149.1 Pan troglodytes ENSPTRG00000034109 I 0.750
HNRNPCL1 Pteropus vampyrus ENSPVAG00000004499 I 0.812
RALYL Pteropus vampyrus ENSPVAG00000010821 I 1.000
RALY Pteropus vampyrus ENSPVAG00000015827 I 0.766
D4ACR0_RAT Rattus norvegicus ENSRNOG00000011621 I 0.812
Raly Rattus norvegicus ENSRNOG00000017405 I 0.797
D3ZW44_RAT Rattus norvegicus ENSRNOG00000042602 I 0.984
RALYL Sorex araneus ENSSARG00000002374 I 0.969
ENSSARG00000002763 Sorex araneus ENSSARG00000002763 I 0.766
HNRNPC Sorex araneus ENSSARG00000003711 I 0.812
ENSSSCG00000007274 Sus scrofa ENSSSCG00000007274 I 0.797
ENSSSCG00000007275 Sus scrofa ENSSSCG00000007275 I 0.797
RALY Spermophilus tridecemlineatus ENSSTOG00000008810 I 0.797
ENSSTOG00000012120 Spermophilus tridecemlineatus ENSSTOG00000012120 I 0.797
RALYL Spermophilus tridecemlineatus ENSSTOG00000012583 I 0.938
RALYL Tupaia belangeri ENSTBEG00000005551 I 0.969
RALY Tupaia belangeri ENSTBEG00000009812 I 0.766
ENSTBEG00000011514 Tupaia belangeri ENSTBEG00000011514 I 0.812
RALY Taeniopygia guttata ENSTGUG00000003715 I 0.812
RALYL Taeniopygia guttata ENSTGUG00000011689 I 0.953
ENSTNIG00000000334 Tetraodon nigroviridis ENSTNIG00000000334 I 0.812
RALYL Tetraodon nigroviridis ENSTNIG00000005594 I 0.859
HNRNPC Takifugu rubripes ENSTRUG00000002153 I 0.750
RALYL Takifugu rubripes ENSTRUG00000003829 I 0.844
RALYL Tarsius syrichta ENSTSYG00000001821 I 0.984
RALY Tarsius syrichta ENSTSYG00000002598 I 0.797
ENSTSYG00000003305 Tarsius syrichta ENSTSYG00000003305 I 0.812
RALY Tursiops truncatus ENSTTRG00000006590 I 0.797
RALYL Tursiops truncatus ENSTTRG00000015762 I 0.984
HNRNPC Tursiops truncatus ENSTTRG00000016055 I 0.812
RALY Vicugna pacos ENSVPAG00000000373 I 0.797
HNRNPCL1 Vicugna pacos ENSVPAG00000007337 I 0.812
RALYL Vicugna pacos ENSVPAG00000008501 I 0.984
hnrnpc Xenopus tropicalis ENSXETG00000016162 I 0.797
ralyl Xenopus tropicalis ENSXETG00000017729 I 0.875
raly Xenopus tropicalis ENSXETG00000019514 I 0.797
P19600 Xenopus laevis P19600 I 0.781