ENSCPOG00000023770 (Cavia porcellus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCPOG00000023770 T35908_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPC
M025_0.6 		Homo sapiens HUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00025 		0.984
HNRNPCL1
M158_0.6 		Homo sapiens HUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00167 		0.891
RALY
M150_0.6 		Homo sapiens UUUUUUB RNAcompete
Ray et al.(2013)
RNCMPT00159 		0.766
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCPOP00000020414 RRM 18 81

Links

Other RRM family RBPs
Other Cavia porcellus RBPs

130 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAEL010467 Aedes aegypti AAEL010467 I 0.000
AGAP002374 Anopheles gambiae AGAP002374 I 0.000
amel4_ncbi_hmm27519 Apis mellifera amel4_ncbi_hmm27519 I 0.000
BGIBMGA006405 Bombyx mori BGIBMGA006405 I 0.000
CPIJ001612 Culex quinquefasciatus CPIJ001612 I 0.000
CpipJ_CPIJ001612 Culex pipiens CpipJ_CPIJ001612 I 0.000
Hrb98DE Drosophila melanogaster FBgn0001215 D 0.000
Hrb87F Drosophila melanogaster FBgn0004237 D 0.000
GF17368 Drosophila ananassae FBgn0094386 I 0.000
GF18582 Drosophila ananassae FBgn0095600 I 0.000
GG11603 Drosophila erecta FBgn0103900 I 0.000
GG17033 Drosophila erecta FBgn0109261 I 0.000
GH17116 Drosophila grimshawi FBgn0124586 I 0.000
GH19058 Drosophila grimshawi FBgn0126525 I 0.000
GI10577 Drosophila mojavensis FBgn0133341 I 0.000
GI10692 Drosophila mojavensis FBgn0133456 I 0.000
GL13791 Drosophila persimilis FBgn0151396 I 0.000
GM16385 Drosophila sechellia FBgn0171300 I 0.000
GM25918 Drosophila sechellia FBgn0180774 I 0.000
GD21374 Drosophila simulans FBgn0192810 I 0.000
GJ22934 Drosophila virilis FBgn0210037 I 0.000
GJ23111 Drosophila virilis FBgn0210213 I 0.000
GK13334 Drosophila willistoni FBgn0215343 I 0.000
GE23791 Drosophila yakuba FBgn0240946 I 0.000
GE24426 Drosophila yakuba FBgn0241543 I 0.000
GA26465-RA Drosophila pseudoobscura FBgn0247839 I 0.000
GA26796-RA Drosophila pseudoobscura FBgn0248169 I 0.000
nasonia_NCBI_hmm916274 Nasonia vitripennis nasonia_NCBI_hmm916274 I 0.000