ENSCPOG00000023770 (Cavia porcellus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCPOG00000023770 T35908_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPC
M025_0.6 		Homo sapiens HUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00025 		0.984
HNRNPCL1
M158_0.6 		Homo sapiens HUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00167 		0.891
RALY
M150_0.6 		Homo sapiens UUUUUUB RNAcompete
Ray et al.(2013)
RNCMPT00159 		0.766
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCPOP00000020414 RRM 18 81

Links

Other RRM family RBPs
Other Cavia porcellus RBPs

130 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAA60937 Xenopus laevis AAA60937 I 0.906
AAH41534 Xenopus laevis AAH41534 I 0.922
AAH71084 Xenopus laevis AAH71084 I 0.906
Ame_R004237 Ailuropoda melanoleuca Ame_R004237 I 0.781
Ame_R004769 Ailuropoda melanoleuca Ame_R004769 I 0.781
Ame_R016471 Ailuropoda melanoleuca Ame_R016471 I 0.984
ENSACAG00000003296 Anolis carolinensis ENSACAG00000003296 I 0.984
RALY Anolis carolinensis ENSACAG00000008983 I 0.797
ENSACAG00000013880 Anolis carolinensis ENSACAG00000013880 I 0.781
Q3SX47_BOVIN Bos taurus ENSBTAG00000011396 I 0.984
Q3T0Y6_BOVIN Bos taurus ENSBTAG00000016524 I 0.781
ENSCAFG00000005504 Canis familiaris ENSCAFG00000005504 I 0.984
RALY Canis familiaris ENSCAFG00000007490 I 0.781
ENSCAFG00000025329 Canis familiaris ENSCAFG00000025329 I 0.781
RALY Choloepus hoffmanni ENSCHOG00000000266 I 0.781
RALYL Choloepus hoffmanni ENSCHOG00000013228 I 0.797
LOC100400868 Callithrix jacchus ENSCJAG00000009033 I 0.984
ENSCJAG00000009354 Callithrix jacchus ENSCJAG00000009354 I 0.953
ENSCJAG00000009449 Callithrix jacchus ENSCJAG00000009449 I 0.750
LOC100401730 Callithrix jacchus ENSCJAG00000018361 I 0.766
RALY Cavia porcellus ENSCPOG00000000309 I 0.781
ENSCPOG00000001474 Cavia porcellus ENSCPOG00000001474 I 0.969
zgc:55733 Danio rerio ENSDARG00000022579 I 0.875
zgc:55701 Danio rerio ENSDARG00000053810 I 0.797
raly Danio rerio ENSDARG00000059972 I 0.766
ENSDNOG00000003161 Dasypus novemcinctus ENSDNOG00000003161 I 0.984
RALY Dasypus novemcinctus ENSDNOG00000003227 I 0.766
RALYL Dasypus novemcinctus ENSDNOG00000005799 I 0.781
Ralyl Dipodomys ordii ENSDORG00000003721 I 0.797
Raly Dipodomys ordii ENSDORG00000013400 I 0.781
LOC100054239 Equus caballus ENSECAG00000012357 I 0.781
LOC100059269 Equus caballus ENSECAG00000017645 I 0.984
RALY Erinaceus europaeus ENSEEUG00000005356 I 0.750
RALYL Erinaceus europaeus ENSEEUG00000007202 I 0.797
HNRNPC Erinaceus europaeus ENSEEUG00000007472 I 0.969
ENSETEG00000001919 Echinops telfairi ENSETEG00000001919 I 0.766
RALYL Echinops telfairi ENSETEG00000014028 I 0.797
HNRNPC Homo sapiens ENSG00000092199 D 0.984
RALY Homo sapiens ENSG00000125970 D 0.766
HNRNPCL1 Homo sapiens ENSG00000179172 D 0.891
RALY Gasterosteus aculeatus ENSGACG00000003636 I 0.719
RALYL Gasterosteus aculeatus ENSGACG00000004991 I 0.797
ENSGACG00000017772 Gasterosteus aculeatus ENSGACG00000017772 I 0.859
ENSGACG00000018932 Gasterosteus aculeatus ENSGACG00000018932 I 0.812
RALY Gallus gallus ENSGALG00000002054 I 0.797
LOC770541 Gallus gallus ENSGALG00000015797 I 0.781
ENSGGOG00000003521 Gorilla gorilla ENSGGOG00000003521 I 0.875
RALY Gorilla gorilla ENSGGOG00000022709 I 0.766
HNRNPC Gorilla gorilla ENSGGOG00000023015 I 0.984
ENSGGOG00000026816 Gorilla gorilla ENSGGOG00000026816 I 0.859
RALY Loxodonta africana ENSLAFG00000000321 I 0.781
ENSLAFG00000009341 Loxodonta africana ENSLAFG00000009341 I 0.984
HNRNPC Macropus eugenii ENSMEUG00000010928 I 0.969
RALY Meleagris gallopavo ENSMGAG00000002214 I 0.797
RALYL Microcebus murinus ENSMICG00000005558 I 0.797
RALY Myotis lucifugus ENSMLUG00000005330 I 0.781
HNRNPC Myotis lucifugus ENSMLUG00000007853 I 0.984
RALYL Myotis lucifugus ENSMLUG00000015286 I 0.797
XM_001095481.1 Macaca mulatta ENSMMUG00000003920 I 0.984
ENSMMUG00000012973 Macaca mulatta ENSMMUG00000012973 I 0.938
HNRNPC Macaca mulatta ENSMMUG00000014809 I 0.984
RALY Macaca mulatta ENSMMUG00000018093 I 0.766
XP_001109022.1 Macaca mulatta ENSMMUG00000018813 I 0.953
RALYL Macaca mulatta ENSMMUG00000031878 I 0.797
XM_001381335.1 Monodelphis domestica ENSMODG00000002819 I 0.734
XM_001368850.1 Monodelphis domestica ENSMODG00000006606 I 0.969
ENSMODG00000017619 Monodelphis domestica ENSMODG00000017619 I 0.875
Raly Mus musculus ENSMUSG00000027593 I 0.781
Ralyl Mus musculus ENSMUSG00000039717 I 0.797
Hnrnpc Mus musculus ENSMUSG00000060373 I 0.984
ENSOANG00000015707 Ornithorhynchus anatinus ENSOANG00000015707 I 0.969
HNRPC_RABIT Oryctolagus cuniculus ENSOCUG00000000339 I 0.984
RALY Oryctolagus cuniculus ENSOCUG00000000477 I 0.750
ENSOCUG00000008851 Oryctolagus cuniculus ENSOCUG00000008851 I 0.969
ENSOCUG00000013026 Oryctolagus cuniculus ENSOCUG00000013026 I 0.984
HNRPC_RABIT Oryctolagus cuniculus ENSOCUG00000015029 I 0.984
HNRNPC Otolemur garnettii ENSOGAG00000012543 I 0.984
ENSOPRG00000002800 Ochotona princeps ENSOPRG00000002800 I 0.969
RALY Ochotona princeps ENSOPRG00000008423 I 0.766
ENSORLG00000003144 Oryzias latipes ENSORLG00000003144 I 0.891
ENSORLG00000009999 Oryzias latipes ENSORLG00000009999 I 0.812
RALYL Oryzias latipes ENSORLG00000012719 I 0.797
RALYL Oryzias latipes ENSORLG00000017934 I 0.797
HNRNPCL1 Procavia capensis ENSPCAG00000003025 I 0.922
RALY Procavia capensis ENSPCAG00000016867 I 0.766
ENSPPYG00000001860 Pongo pygmaeus ENSPPYG00000001860 I 0.906
ENSPPYG00000005593 Pongo pygmaeus ENSPPYG00000005593 I 0.984
ENSPPYG00000010932 Pongo pygmaeus ENSPPYG00000010932 I 0.766
ENSPPYG00000018710 Pongo pygmaeus ENSPPYG00000018710 I 0.797
XR_022011.1 Pan troglodytes ENSPTRG00000006118 I 0.984
RALY Pan troglodytes ENSPTRG00000013410 I 0.766
RALYL Pan troglodytes ENSPTRG00000020381 I 0.797
XM_001153149.1 Pan troglodytes ENSPTRG00000034109 I 0.891
HNRNPCL1 Pteropus vampyrus ENSPVAG00000004499 I 0.984
RALYL Pteropus vampyrus ENSPVAG00000010821 I 0.797
RALY Pteropus vampyrus ENSPVAG00000015827 I 0.750
D4ACR0_RAT Rattus norvegicus ENSRNOG00000011621 I 0.984
Raly Rattus norvegicus ENSRNOG00000017405 I 0.781
D3ZW44_RAT Rattus norvegicus ENSRNOG00000042602 I 0.781
RALYL Sorex araneus ENSSARG00000002374 I 0.797
ENSSARG00000002763 Sorex araneus ENSSARG00000002763 I 0.750
HNRNPC Sorex araneus ENSSARG00000003711 I 0.984
ENSSSCG00000007274 Sus scrofa ENSSSCG00000007274 I 0.781
ENSSSCG00000007275 Sus scrofa ENSSSCG00000007275 I 0.781
RALY Spermophilus tridecemlineatus ENSSTOG00000008810 I 0.781
ENSSTOG00000012120 Spermophilus tridecemlineatus ENSSTOG00000012120 I 0.969
RALYL Spermophilus tridecemlineatus ENSSTOG00000012583 I 0.766
RALYL Tupaia belangeri ENSTBEG00000005551 I 0.781
RALY Tupaia belangeri ENSTBEG00000009812 I 0.766
ENSTBEG00000011514 Tupaia belangeri ENSTBEG00000011514 I 0.984
RALY Taeniopygia guttata ENSTGUG00000003715 I 0.797
RALYL Taeniopygia guttata ENSTGUG00000011689 I 0.781
ENSTNIG00000000334 Tetraodon nigroviridis ENSTNIG00000000334 I 0.875
RALYL Tetraodon nigroviridis ENSTNIG00000005594 I 0.797
HNRNPC Takifugu rubripes ENSTRUG00000002153 I 0.844
RALYL Takifugu rubripes ENSTRUG00000003829 I 0.781
RALYL Tarsius syrichta ENSTSYG00000001821 I 0.797
RALY Tarsius syrichta ENSTSYG00000002598 I 0.734
ENSTSYG00000003305 Tarsius syrichta ENSTSYG00000003305 I 0.984
RALY Tursiops truncatus ENSTTRG00000006590 I 0.781
RALYL Tursiops truncatus ENSTTRG00000015762 I 0.797
HNRNPC Tursiops truncatus ENSTTRG00000016055 I 0.984
RALY Vicugna pacos ENSVPAG00000000373 I 0.781
HNRNPCL1 Vicugna pacos ENSVPAG00000007337 I 0.984
RALYL Vicugna pacos ENSVPAG00000008501 I 0.797
hnrnpc Xenopus tropicalis ENSXETG00000016162 I 0.906
ralyl Xenopus tropicalis ENSXETG00000017729 I 0.750
raly Xenopus tropicalis ENSXETG00000019514 I 0.781
fgenesh2_pg.scaffold_6000171 Branchiostoma floridae fgenesh2_pg.scaffold_6000171 I 0.719
P19600 Xenopus laevis P19600 I 0.906