ENSGACG00000014500 (Gasterosteus aculeatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSGACG00000014500 T37520_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
U2AF2
M077_0.6 		Homo sapiens UUUUUYC RNAcompete
Ray et al.(2013)
RNCMPT00079 		0.876
U2af50
M078_0.6 		Drosophila melanogaster UUUUUYY RNAcompete
Ray et al.(2013)
RNCMPT00080 		0.790
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000019133 RRM 151 225
ENSGACP00000019133 RRM 261 331
ENSGACP00000019133 RRM 394 457

Links

Other RRM family RBPs
Other Gasterosteus aculeatus RBPs

60 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
185543 Helobdella robusta 185543 I 0.773
AAEL002818 Aedes aegypti AAEL002818 I 0.790
AAH44032 Xenopus laevis AAH44032 I 0.876
AGAP002908 Anopheles gambiae AGAP002908 I 0.786
amel4_ncbi_hmm5234 Apis mellifera amel4_ncbi_hmm5234 I 0.795
Ame_R015025 Ailuropoda melanoleuca Ame_R015025 I 0.876
Aqu1.223751 Amphimedon queenslandica Aqu1.223751 I 0.705
BGIBMGA007082 Bombyx mori BGIBMGA007082 I 0.800
CBG15152 Caenorhabditis briggsae CBG15152 I 0.706
CPIJ012850 Culex quinquefasciatus CPIJ012850 I 0.790
CpipJ_CPIJ012850 Culex pipiens CpipJ_CPIJ012850 I 0.790
DGIL_AUG5s12651g2t1 Acyrtosiphon pisum DGIL_AUG5s12651g2t1 I 0.738
DGIL_AUG5s4302g1t1 Acyrtosiphon pisum DGIL_AUG5s4302g1t1 I 0.786
DGIL_AUG5s6719g2t1 Acyrtosiphon pisum DGIL_AUG5s6719g2t1 I 0.786
U2AF2 Anolis carolinensis ENSACAG00000015489 I 0.876
Q24JZ8_BOVIN Bos taurus ENSBTAG00000002830 I 0.876
U2AF2 Canis familiaris ENSCAFG00000002551 I 0.871
ENSCING00000003455 Ciona intestinalis ENSCING00000003455 I 0.763
LOC100400743 Callithrix jacchus ENSCJAG00000017128 I 0.752
U2AF2 Cavia porcellus ENSCPOG00000001582 I 0.876
ENSCSAVG00000006813 Ciona savignyi ENSCSAVG00000006813 I 0.749
u2af2b Danio rerio ENSDARG00000011740 I 0.857
u2af2a Danio rerio ENSDARG00000012505 I 0.867
U2af2 Dipodomys ordii ENSDORG00000003250 I 0.762
LOC100050729 Equus caballus ENSECAG00000010110 I 0.876
U2AF2 Felis catus ENSFCAG00000011504 I 0.710
U2AF2 Homo sapiens ENSG00000063244 D 0.876
U2AF2 Gasterosteus aculeatus ENSGACG00000010632 I 0.876
ENSLAFG00000018056 Loxodonta africana ENSLAFG00000018056 I 0.876
ENSMMUG00000004810 Macaca mulatta ENSMMUG00000004810 I 0.876
XM_001119590.1 Macaca mulatta ENSMMUG00000019197 I 0.757
U2af2 Mus musculus ENSMUSG00000030435 I 0.876
U2AF2 Oryzias latipes ENSORLG00000011545 I 0.881
U2AF2 Pan troglodytes ENSPTRG00000011523 I 0.762
U2AF2 Pteropus vampyrus ENSPVAG00000004540 I 0.871
LOC690372 Rattus norvegicus ENSRNOG00000015914 I 0.876
U2AF2 Tetraodon nigroviridis ENSTNIG00000008106 I 0.876
ENSTNIG00000011257 Tetraodon nigroviridis ENSTNIG00000011257 I 0.967
U2AF2 Takifugu rubripes ENSTRUG00000005514 I 0.876
ENSTRUG00000006885 Takifugu rubripes ENSTRUG00000006885 I 0.971
U2AF2 Tursiops truncatus ENSTTRG00000000987 I 0.876
u2af2 Xenopus tropicalis ENSXETG00000019128 I 0.876
estExt_Genewise1.C_1170024 Capitella teleta estExt_Genewise1.C_1170024 I 0.776
estExt_Genewise1.C_sca_340148 Lottia gigantea estExt_Genewise1.C_sca_340148 I 0.805
U2af50 Drosophila melanogaster FBgn0005411 D 0.790
GA22177-RA Drosophila pseudoobscura FBgn0082156 I 0.790
GF19596 Drosophila ananassae FBgn0096603 I 0.790
GG19328 Drosophila erecta FBgn0111532 I 0.790
GH12033 Drosophila grimshawi FBgn0119512 I 0.781
GI14308 Drosophila mojavensis FBgn0137061 I 0.781
GL15893 Drosophila persimilis FBgn0153497 I 0.790
GM13406 Drosophila sechellia FBgn0168337 I 0.790
GD24494 Drosophila simulans FBgn0195829 I 0.790
GJ19364 Drosophila virilis FBgn0206507 I 0.729
GK10063 Drosophila willistoni FBgn0212078 I 0.790
GE15975 Drosophila yakuba FBgn0233531 I 0.790
fgenesh1_pm.scaffold_8000042 Nematostella vectensis fgenesh1_pm.scaffold_8000042 I 0.749
nasonia_NCBI_hmm415104 Nasonia vitripennis nasonia_NCBI_hmm415104 I 0.800
PHUM460480 Pediculus humanus PHUM460480 I 0.767
Smp_019690 Schistosoma mansoni Smp_019690 I 0.738