PSPC1_CHICK (Gallus gallus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSGALG00000017142 T37735_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SFPQ
M308_0.6 		Homo sapiens Sequence logo not available UGGAGAGGAAC SELEX
Cook et al.(2011)
489_12403470 		0.759
SFPQ
M168_0.6 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
RNCMPT00177 		0.759
NONO
M309_0.6 		Homo sapiens Sequence logo not available GAGAGGAAC SELEX
Cook et al.(2011)
490_12403470 		0.705
NONO
M307_0.6 		Homo sapiens AGGGA SELEX
Cook et al.(2011)
488_9001221 		0.705
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSGALP00000027634 RRM 83 147
ENSGALP00000027634 RRM 157 222
ENSGALP00000035658 RRM 83 147
ENSGALP00000035658 RRM 157 222

Links

Other RRM family RBPs
Other Gallus gallus RBPs

101 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
1600010087 Ostreococcus tauri 1600010087 N 0.000
29868.m000351 Ricinus communis 29868.m000351 N 0.000
AAEL005909 Aedes aegypti AAEL005909 N 0.000
Aqu1.214150 Amphimedon queenslandica Aqu1.214150 N 0.000
AT5G12190 Arabidopsis thaliana AT5G12190-TAIR-G N 0.000
BGIOSIBCE013412 Oryza indica BGIOSIBCE013412 N 0.000
BRADI1G04240 Brachypodium distachyon BRADI1G04240 N 0.000
cassava30358.valid.m1 Manihot esculenta cassava30358.valid.m1 N 0.000
chr2.CM0308.280.nc Lotus japonicus chr2.CM0308.280.nc N 0.000
CPIJ008576 Culex quinquefasciatus CPIJ008576 N 0.000
CpipJ_CPIJ008576 Culex pipiens CpipJ_CPIJ008576 N 0.000
Cucsa.086930 Cucumis sativus Cucsa.086930 N 0.000
ENSCING00000012689 Ciona intestinalis ENSCING00000012689 N 0.000
ENSCSAVG00000008970 Ciona savignyi ENSCSAVG00000008970 N 0.000
ENSTNIG00000009719 Tetraodon nigroviridis ENSTNIG00000009719 N 0.000
ENSTRUG00000006551 Takifugu rubripes ENSTRUG00000006551 N 0.000
estExt_fgenesh1_pg.C_130126 Phytophthora capsici estExt_fgenesh1_pg.C_130126 N 0.000
estExt_fgenesh2_pg.C_240194 Selaginella moellendorfii estExt_fgenesh2_pg.C_240194 N 0.000
estExt_fgeneshCV_pm.C_140033 Chlorella vulgaris estExt_fgeneshCV_pm.C_140033 N 0.000
estExt_Genemark1.C_140122 Coccomyxa C 169 estExt_Genemark1.C_140122 N 0.000
estExt_Genewise1.C_630098 Physcomitrella patens estExt_Genewise1.C_630098 N 0.000
estExt_Genewise1Plus.C_10491 Micromonas pusilla estExt_Genewise1Plus.C_10491 N 0.000
estExt_Genewise1Plus.C_10695 Chlorella NC64A estExt_Genewise1Plus.C_10695 N 0.000
estExt_GenewiseH_1.C_6800062 Branchiostoma floridae estExt_GenewiseH_1.C_6800062 N 0.000
estExt_GenewiseW_1.C_340090 Chlamydomonas reinhardtii estExt_GenewiseW_1.C_340090 N 0.000
e_gw1.11.964.1 Ostreococcus RCC809 e_gw1.11.964.1 N 0.000
e_gw1.17.197.1 Volvox carteri e_gw1.17.197.1 N 0.000
fgeneshTA2_pm.C_scaffold_21000029 Trichoplax adhaerens fgeneshTA2_pm.C_scaffold_21000029 N 0.000
Glyma02g44710.1 Glycine max Glyma02g44710.1 N 0.000
Glyma14g04020.1 Glycine max Glyma14g04020.1 N 0.000
GRMZM2G107745 Zea mays GRMZM2G107745 N 0.000
GRMZM2G358416 Zea mays GRMZM2G358416 N 0.000
GSVIVG00037329001 Vitis vinifera GSVIVG00037329001 N 0.000
ISCW024082 Ixodes scapularis ISCW024082 N 0.000
LOC_Os03g59710 Oryza sativa LOC_Os03g59710 N 0.000
MDP0000185506 Malus x domestica MDP0000185506 N 0.000
MDP0000916880 Malus x domestica MDP0000916880 N 0.000
Medtr5g096400 Medicago truncatula Medtr5g096400 N 0.000
mgf016428m Mimulus guttatus mgf016428m N 0.000
PHUM617060 Pediculus humanus PHUM617060 N 0.000
PITG_10282 Phytophthora infestans PITG_10282 N 0.000
PK21780.1 Cannabis sativa PK21780.1 N 0.000
B9GG60_POPTR Populus trichocarpa POPTR_0001s28000 N 0.000
B9HNI9_POPTR Populus trichocarpa POPTR_0009s07180 N 0.000
ppa013405m Prunus persica ppa013405m N 0.000
ppa013407m Prunus persica ppa013407m N 0.000
SB01G003790 Sorghum bicolor Sb01g003790 N 0.000
XM_002873508.1 Arabidopsis lyrata scaffold_601250.1 N 0.000
Sjc_0071370 Schistosoma japonicum Sjc_0071370 N 0.000
Smp_032060 Schistosoma mansoni Smp_032060 N 0.000
SNAPOd2T00023714001 Oikopleura dioica SNAPOd2T00023714001 N 0.000
SPRG_00106 Saprolegnia parasitica SPRG_00106 N 0.000
s_454910 Phytophthora sojae s_454910 N 0.000
XP_002160322.1 Hydra magnipapillata XP_002160322.1 N 0.000