estExt_GenewiseH_1.C_6800062 (Branchiostoma floridae)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_GenewiseH_1.C_6800062 T51560_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_GenewiseH_1.C_6800062 RRM 21 88

Links

Other RRM family RBPs
Other Branchiostoma floridae RBPs

145 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSTNIG00000009719 Tetraodon nigroviridis ENSTNIG00000009719 N 0.956
ENSTRUG00000006551 Takifugu rubripes ENSTRUG00000006551 N 0.956
LOC100056247 Equus caballus ENSECAG00000015618 N 0.941
0610009D07Rik Dipodomys ordii ENSDORG00000009772 N 0.941
ENSDNOG00000007148 Dasypus novemcinctus ENSDNOG00000007148 N 0.941
ENSFCAG00000004304 Felis catus ENSFCAG00000004304 N 0.941
ENSLAFG00000029423 Loxodonta africana ENSLAFG00000029423 N 0.941
AC008073.5 Homo sapiens ENSG00000115128 N 0.941
sf3b14 Danio rerio ENSDARG00000009753 N 0.941
SF3B14 Gallus gallus ENSGALG00000016501 N 0.941
ENSCPOG00000008016 Cavia porcellus ENSCPOG00000008016 N 0.941
XM_532889.2 Canis familiaris ENSCAFG00000003957 N 0.941
Q2KIQ7_BOVIN Bos taurus ENSBTAG00000003407 N 0.941
ENSCHOG00000000689 Choloepus hoffmanni ENSCHOG00000000689 N 0.941
ENSCING00000012689 Ciona intestinalis ENSCING00000012689 N 0.941
ENSMGAG00000014057 Meleagris gallopavo ENSMGAG00000014057 N 0.941
LOC100386467 Callithrix jacchus ENSCJAG00000007716 N 0.941
ENSCSAVG00000008970 Ciona savignyi ENSCSAVG00000008970 N 0.941
XM_001098393.1 Macaca mulatta ENSMMUG00000001282 N 0.941
ENSTBEG00000012532 Tupaia belangeri ENSTBEG00000012532 N 0.941
ENSSSCG00000008587 Sus scrofa ENSSSCG00000008587 N 0.941
SF3B14 Taeniopygia guttata ENSTGUG00000013191 N 0.941
ENSTSYG00000013978 Tarsius syrichta ENSTSYG00000013978 N 0.941
ENSVPAG00000005546 Vicugna pacos ENSVPAG00000005546 N 0.941
ENSTTRG00000013430 Tursiops truncatus ENSTTRG00000013430 N 0.941
ENSSARG00000011902 Sorex araneus ENSSARG00000011902 N 0.941
ENSPVAG00000011346 Pteropus vampyrus ENSPVAG00000011346 N 0.941
0610009D07Rik Mus musculus ENSMUSG00000037361 N 0.941
ENSACAG00000011677 Anolis carolinensis ENSACAG00000011677 N 0.941
ENSOANG00000007627 Ornithorhynchus anatinus ENSOANG00000007627 N 0.941
ENSOCUG00000022008 Oryctolagus cuniculus ENSOCUG00000022008 N 0.941
XM_515324.2 Pan troglodytes ENSPTRG00000011709 N 0.941
ENSPPYG00000012603 Pongo pygmaeus ENSPPYG00000012603 N 0.941
ENSMLUG00000002473 Myotis lucifugus ENSMLUG00000002473 N 0.941
ENSGACG00000004803 Gasterosteus aculeatus ENSGACG00000004803 N 0.941
Ame_R001592 Ailuropoda melanoleuca Ame_R001592 N 0.941
AAEL005909 Aedes aegypti AAEL005909 N 0.926
nasonia_NCBI_hmm648054 Nasonia vitripennis nasonia_NCBI_hmm648054 N 0.926
estExt_fgenesh2_kg.C_sca_670005 Lottia gigantea estExt_fgenesh2_kg.C_sca_670005 N 0.926
ENSORLG00000015955 Oryzias latipes ENSORLG00000015955 N 0.926
CPIJ008576 Culex quinquefasciatus CPIJ008576 N 0.926
nasonia_NCBI_hmm146063 Nasonia vitripennis nasonia_NCBI_hmm146063 N 0.926
amel4_ncbi_hmm5835 Tribolium castaneum amel4_ncbi_hmm5835 N 0.926
ISCW024082 Ixodes scapularis ISCW024082 N 0.926
PHUM617060 Pediculus humanus PHUM617060 N 0.926
CpipJ_CPIJ008576 Culex pipiens CpipJ_CPIJ008576 N 0.926
amel4_ncbi_hmm5835 Apis mellifera amel4_ncbi_hmm5835 N 0.926
sf3b14 Xenopus tropicalis ENSXETG00000018204 N 0.926
DGIL_AUG5s10565g5t1 Acyrtosiphon pisum DGIL_AUG5s10565g5t1 N 0.926
AGAP002780 Anopheles gambiae AGAP002780 N 0.912
AAH57709 Xenopus laevis AAH57709 N 0.912
XM_001364269.1 Monodelphis domestica ENSMODG00000002144 N 0.912
estExt_fgenesh1_kg.C_20004 Daphnia pulex estExt_fgenesh1_kg.C_20004 N 0.899
estExt_fgenesh1_pg.C_1580052 Nematostella vectensis estExt_fgenesh1_pg.C_1580052 N 0.897
Sjc_0071370 Schistosoma japonicum Sjc_0071370 N 0.897
Smp_032060 Schistosoma mansoni Smp_032060 N 0.897
68671 Helobdella robusta 68671 N 0.897
estExt_fgenesh1_pg.C_2760028 Capitella teleta estExt_fgenesh1_pg.C_2760028 N 0.882
CG13298 Drosophila melanogaster FBgn0035692 N 0.870
GF10910 Drosophila ananassae FBgn0087950 N 0.870
GM13852 Drosophila sechellia FBgn0168783 N 0.870
GD13137 Drosophila simulans FBgn0184859 N 0.870
GJ12004 Drosophila virilis FBgn0199256 N 0.870
GK17258 Drosophila willistoni FBgn0219257 N 0.870
GL22529 Drosophila persimilis FBgn0160121 N 0.870
GI13232 Drosophila mojavensis FBgn0135989 N 0.870
GA12181-RA Drosophila pseudoobscura FBgn0072229 N 0.870
GE20495 Drosophila yakuba FBgn0068445 N 0.870
GG14070 Drosophila erecta FBgn0106332 N 0.870
GH16287 Drosophila grimshawi FBgn0123758 N 0.870
XP_002160322.1 Hydra magnipapillata XP_002160322.1 N 0.868
fgeneshTA2_pm.C_scaffold_21000029 Trichoplax adhaerens fgeneshTA2_pm.C_scaffold_21000029 N 0.855
SNAPOd2T00023714001 Oikopleura dioica SNAPOd2T00023714001 N 0.853
Minc01156 Meloidogyne incognita Minc01156 N 0.853
ENSCHOG00000013886 Choloepus hoffmanni ENSCHOG00000013886 N 0.838
e_gw1.13.49.1 Emiliania huxleyi e_gw1.13.49.1 N 0.826
LOAG_04189 Loa loa LOAG_04189 N 0.826
PPA24922 Pristionchus pacificus PPA24922 N 0.824
e_gw1.17.197.1 Volvox carteri e_gw1.17.197.1 N 0.809
GRMZM2G107745 Zea mays GRMZM2G107745 N 0.809
Aqu1.214150 Amphimedon queenslandica Aqu1.214150 N 0.809
GRMZM2G358416 Zea mays GRMZM2G358416 N 0.809
SB01G003790 Sorghum bicolor Sb01g003790 N 0.809
AT5G12190 Arabidopsis thaliana AT5G12190-TAIR-G N 0.797
XM_002873508.1 Arabidopsis lyrata scaffold_601250.1 N 0.797
CBG06987 Caenorhabditis briggsae CBG06987 N 0.794
TA13725 Theileria annulata TA13725 N 0.794
CRE22109 Caenorhabditis remanei CRE22109 N 0.794
CJA01433 Caenorhabditis japonica CJA01433 N 0.794
C50D2.5 Caenorhabditis elegans C50D2.5 N 0.794
BRADI1G04240 Brachypodium distachyon BRADI1G04240 N 0.794
SPRG_00106 Saprolegnia parasitica SPRG_00106 N 0.794
CBN08400 Caenorhabditis brenneri CBN08400 N 0.794
LOC_Os03g59710 Oryza sativa LOC_Os03g59710 N 0.794
estExt_fgenesh2_pg.C_240194 Selaginella moellendorfii estExt_fgenesh2_pg.C_240194 N 0.794
BGIOSIBCE013412 Oryza indica BGIOSIBCE013412 N 0.794
estExt_Genewise1.C_630098 Physcomitrella patens estExt_Genewise1.C_630098 N 0.779
B9HNI9_POPTR Populus trichocarpa POPTR_0009s07180 N 0.779
EDO06533.1 Babesia bovis EDO06533.1 N 0.779
estExt_Genewise1Plus.C_10491 Micromonas pusilla estExt_Genewise1Plus.C_10491 N 0.779
fgenesh1_pm.C_scaffold_108000003 Phytophthora ramorum fgenesh1_pm.C_scaffold_108000003 N 0.768
s_454910 Phytophthora sojae s_454910 N 0.768
Medtr5g096400 Medicago truncatula Medtr5g096400 N 0.768
chr2.CM0308.280.nc Lotus japonicus chr2.CM0308.280.nc N 0.768
estExt_fgenesh1_pg.C_130126 Phytophthora capsici estExt_fgenesh1_pg.C_130126 N 0.768
PCHAS_144180 Plasmodium chabaudi PCHAS_144180 N 0.768
mgf016428m Mimulus guttatus mgf016428m N 0.768
Glyma02g44710.1 Glycine max Glyma02g44710.1 N 0.768
PITG_10282 Phytophthora infestans PITG_10282 N 0.768
29868.m000351 Ricinus communis 29868.m000351 N 0.765
PFL1200c Plasmodium falciparum PFL1200c N 0.765
PVX_123875 Plasmodium vivax PVX_123875 N 0.765
PKH_144160 Plasmodium knowlesi PKH_144160 N 0.765
cassava30358.valid.m1 Manihot esculenta cassava30358.valid.m1 N 0.765
Glyma14g04020.1 Glycine max Glyma14g04020.1 N 0.765
MDP0000185506 Malus x domestica MDP0000185506 N 0.765
B9GG60_POPTR Populus trichocarpa POPTR_0001s28000 N 0.765
ppa013405m Prunus persica ppa013405m N 0.765
ppa013407m Prunus persica ppa013407m N 0.765
PK21780.1 Cannabis sativa PK21780.1 N 0.765
DDB_G0286297 Dictyostelium discoideum DDB_G0286297 N 0.765
estExt_GenewiseW_1.C_340090 Chlamydomonas reinhardtii estExt_GenewiseW_1.C_340090 N 0.765
GSPATP00004048001 Paramecium tetraurelia GSPATP00004048001 N 0.765
GSVIVG00037329001 Vitis vinifera GSVIVG00037329001 N 0.765
Cucsa.086930 Cucumis sativus Cucsa.086930 N 0.754
PBANKA_143980 Plasmodium berghei PBANKA_143980 N 0.754
GSPATP00010032001 Paramecium tetraurelia GSPATP00010032001 N 0.750
TP02_0539 Theileria parva TP02_0539 N 0.750
estExt_Genewise1Plus.C_10695 Chlorella NC64A estExt_Genewise1Plus.C_10695 N 0.750
estExt_fgeneshCV_pm.C_140033 Chlorella vulgaris estExt_fgeneshCV_pm.C_140033 N 0.750
estExt_Genemark1.C_140122 Coccomyxa C 169 estExt_Genemark1.C_140122 N 0.750
e_gw1.11.964.1 Ostreococcus RCC809 e_gw1.11.964.1 N 0.750
GP3.080340 Batrachochytrium dendrobatidis GP3.080340 N 0.739
PHATR_8132 Phaeodactylum tricornutum Phatr8132 N 0.739
eugene.1500010066 Ostreococcus lucimarinus eugene.1500010066 N 0.735
32497 Aureococcus anophagefferens 32497 N 0.730
estExt_fgeneshPB_pg.C_50297 Phycomyces blakesleeanus estExt_fgeneshPB_pg.C_50297 N 0.725
SPPG_04286 Spizellomyces punctatus SPPG_04286 N 0.725
THAPSDRAFT_20086 Thalassiosira pseudonana Thaps20086 N 0.725
estExt_fgenesh1_pg.C_120176 Monosiga brevicollis estExt_fgenesh1_pg.C_120176 N 0.725
1600010087 Ostreococcus tauri 1600010087 N 0.721
PY07239 Plasmodium yoelii PY07239 N 0.721
MDP0000916880 Malus x domestica MDP0000916880 N 0.721
fgeneshMC_pg.3_#_621 Mucor circinelloides fgeneshMC_pg.3_#_621 N 0.710
RO3G_04631 Rhizopus oryzae RO3G_04631 N 0.710