SNAPOd2T00023714001 (Oikopleura dioica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 SNAPOd2T00023714001 T48450_0.6 Genoscope (2013-Jan-11)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
SNAPOd2T00023714001 RRM 21 88

Links

Other RRM family RBPs
Other Oikopleura dioica RBPs

128 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
estExt_GenewiseH_1.C_6800062 Branchiostoma floridae estExt_GenewiseH_1.C_6800062 N 0.853
ENSCING00000012689 Ciona intestinalis ENSCING00000012689 N 0.838
ENSCSAVG00000008970 Ciona savignyi ENSCSAVG00000008970 N 0.838
XP_002160322.1 Hydra magnipapillata XP_002160322.1 N 0.838
PPA24922 Pristionchus pacificus PPA24922 N 0.838
nasonia_NCBI_hmm648054 Nasonia vitripennis nasonia_NCBI_hmm648054 N 0.824
ENSTRUG00000006551 Takifugu rubripes ENSTRUG00000006551 N 0.824
amel4_ncbi_hmm5835 Apis mellifera amel4_ncbi_hmm5835 N 0.824
amel4_ncbi_hmm5835 Tribolium castaneum amel4_ncbi_hmm5835 N 0.824
ENSTNIG00000009719 Tetraodon nigroviridis ENSTNIG00000009719 N 0.824
nasonia_NCBI_hmm146063 Nasonia vitripennis nasonia_NCBI_hmm146063 N 0.824
estExt_fgenesh2_kg.C_sca_670005 Lottia gigantea estExt_fgenesh2_kg.C_sca_670005 N 0.824
ENSOCUG00000022008 Oryctolagus cuniculus ENSOCUG00000022008 N 0.809
AAEL005909 Aedes aegypti AAEL005909 N 0.809
ENSMLUG00000002473 Myotis lucifugus ENSMLUG00000002473 N 0.809
ENSOANG00000007627 Ornithorhynchus anatinus ENSOANG00000007627 N 0.809
CpipJ_CPIJ008576 Culex pipiens CpipJ_CPIJ008576 N 0.809
ENSMGAG00000014057 Meleagris gallopavo ENSMGAG00000014057 N 0.809
0610009D07Rik Mus musculus ENSMUSG00000037361 N 0.809
XM_001098393.1 Macaca mulatta ENSMMUG00000001282 N 0.809
AC008073.5 Homo sapiens ENSG00000115128 N 0.809
ENSCHOG00000000689 Choloepus hoffmanni ENSCHOG00000000689 N 0.809
XM_532889.2 Canis familiaris ENSCAFG00000003957 N 0.809
0610009D07Rik Dipodomys ordii ENSDORG00000009772 N 0.809
LOC100386467 Callithrix jacchus ENSCJAG00000007716 N 0.809
sf3b14 Danio rerio ENSDARG00000009753 N 0.809
ENSCPOG00000008016 Cavia porcellus ENSCPOG00000008016 N 0.809
Q2KIQ7_BOVIN Bos taurus ENSBTAG00000003407 N 0.809
ENSACAG00000011677 Anolis carolinensis ENSACAG00000011677 N 0.809
ENSGACG00000004803 Gasterosteus aculeatus ENSGACG00000004803 N 0.809
SF3B14 Gallus gallus ENSGALG00000016501 N 0.809
Smp_032060 Schistosoma mansoni Smp_032060 N 0.809
ENSFCAG00000004304 Felis catus ENSFCAG00000004304 N 0.809
LOC100056247 Equus caballus ENSECAG00000015618 N 0.809
CPIJ008576 Culex quinquefasciatus CPIJ008576 N 0.809
ENSLAFG00000029423 Loxodonta africana ENSLAFG00000029423 N 0.809
ENSPPYG00000012603 Pongo pygmaeus ENSPPYG00000012603 N 0.809
ENSTTRG00000013430 Tursiops truncatus ENSTTRG00000013430 N 0.809
Ame_R001592 Ailuropoda melanoleuca Ame_R001592 N 0.809
ENSTSYG00000013978 Tarsius syrichta ENSTSYG00000013978 N 0.809
Sjc_0071370 Schistosoma japonicum Sjc_0071370 N 0.809
ENSVPAG00000005546 Vicugna pacos ENSVPAG00000005546 N 0.809
68671 Helobdella robusta 68671 N 0.809
PHUM617060 Pediculus humanus PHUM617060 N 0.809
ISCW024082 Ixodes scapularis ISCW024082 N 0.809
SF3B14 Taeniopygia guttata ENSTGUG00000013191 N 0.809
sf3b14 Xenopus tropicalis ENSXETG00000018204 N 0.809
ENSSSCG00000008587 Sus scrofa ENSSSCG00000008587 N 0.809
ENSPVAG00000011346 Pteropus vampyrus ENSPVAG00000011346 N 0.809
XM_515324.2 Pan troglodytes ENSPTRG00000011709 N 0.809
ENSSARG00000011902 Sorex araneus ENSSARG00000011902 N 0.809
ENSDNOG00000007148 Dasypus novemcinctus ENSDNOG00000007148 N 0.809
ENSTBEG00000012532 Tupaia belangeri ENSTBEG00000012532 N 0.809
GM13852 Drosophila sechellia FBgn0168783 N 0.797
GI13232 Drosophila mojavensis FBgn0135989 N 0.797
GD13137 Drosophila simulans FBgn0184859 N 0.797
GL22529 Drosophila persimilis FBgn0160121 N 0.797
GK17258 Drosophila willistoni FBgn0219257 N 0.797
GH16287 Drosophila grimshawi FBgn0123758 N 0.797
estExt_fgenesh1_kg.C_20004 Daphnia pulex estExt_fgenesh1_kg.C_20004 N 0.797
GJ12004 Drosophila virilis FBgn0199256 N 0.797
fgeneshTA2_pm.C_scaffold_21000029 Trichoplax adhaerens fgeneshTA2_pm.C_scaffold_21000029 N 0.797
GE20495 Drosophila yakuba FBgn0068445 N 0.797
GG14070 Drosophila erecta FBgn0106332 N 0.797
GA12181-RA Drosophila pseudoobscura FBgn0072229 N 0.797
CG13298 Drosophila melanogaster FBgn0035692 N 0.797
GF10910 Drosophila ananassae FBgn0087950 N 0.797
AAH57709 Xenopus laevis AAH57709 N 0.794
DGIL_AUG5s10565g5t1 Acyrtosiphon pisum DGIL_AUG5s10565g5t1 N 0.794
AGAP002780 Anopheles gambiae AGAP002780 N 0.794
ENSORLG00000015955 Oryzias latipes ENSORLG00000015955 N 0.794
XM_001364269.1 Monodelphis domestica ENSMODG00000002144 N 0.779
LOAG_04189 Loa loa LOAG_04189 N 0.768
e_gw1.13.49.1 Emiliania huxleyi e_gw1.13.49.1 N 0.768
CRE22109 Caenorhabditis remanei CRE22109 N 0.765
Minc01156 Meloidogyne incognita Minc01156 N 0.765
estExt_fgenesh1_pg.C_1580052 Nematostella vectensis estExt_fgenesh1_pg.C_1580052 N 0.765
C50D2.5 Caenorhabditis elegans C50D2.5 N 0.765
CBG06987 Caenorhabditis briggsae CBG06987 N 0.765
estExt_Genewise1Plus.C_10491 Micromonas pusilla estExt_Genewise1Plus.C_10491 N 0.765
estExt_fgenesh1_pg.C_2760028 Capitella teleta estExt_fgenesh1_pg.C_2760028 N 0.765
CBN08400 Caenorhabditis brenneri CBN08400 N 0.765
TA13725 Theileria annulata TA13725 N 0.750
SPRG_00106 Saprolegnia parasitica SPRG_00106 N 0.750
e_gw1.17.197.1 Volvox carteri e_gw1.17.197.1 N 0.750
estExt_fgenesh1_pg.C_130126 Phytophthora capsici estExt_fgenesh1_pg.C_130126 N 0.739
XM_002873508.1 Arabidopsis lyrata scaffold_601250.1 N 0.739
AT5G12190 Arabidopsis thaliana AT5G12190-TAIR-G N 0.739
s_454910 Phytophthora sojae s_454910 N 0.739
PITG_10282 Phytophthora infestans PITG_10282 N 0.739
CJA01433 Caenorhabditis japonica CJA01433 N 0.735
fgenesh1_pm.C_scaffold_108000003 Phytophthora ramorum fgenesh1_pm.C_scaffold_108000003 N 0.725
PCHAS_144180 Plasmodium chabaudi PCHAS_144180 N 0.725
EDO06533.1 Babesia bovis EDO06533.1 N 0.721
GRMZM2G358416 Zea mays GRMZM2G358416 N 0.721
GRMZM2G107745 Zea mays GRMZM2G107745 N 0.721
GSPATP00004048001 Paramecium tetraurelia GSPATP00004048001 N 0.721
SB01G003790 Sorghum bicolor Sb01g003790 N 0.721
B9HNI9_POPTR Populus trichocarpa POPTR_0009s07180 N 0.721
estExt_fgeneshCV_pm.C_140033 Chlorella vulgaris estExt_fgeneshCV_pm.C_140033 N 0.721
estExt_Genewise1.C_630098 Physcomitrella patens estExt_Genewise1.C_630098 N 0.721
estExt_Genemark1.C_140122 Coccomyxa C 169 estExt_Genemark1.C_140122 N 0.721
Aqu1.214150 Amphimedon queenslandica Aqu1.214150 N 0.721
Glyma02g44710.1 Glycine max Glyma02g44710.1 N 0.710
Medtr5g096400 Medicago truncatula Medtr5g096400 N 0.710
chr2.CM0308.280.nc Lotus japonicus chr2.CM0308.280.nc N 0.710
PK21780.1 Cannabis sativa PK21780.1 N 0.706
TP02_0539 Theileria parva TP02_0539 N 0.706
B9GG60_POPTR Populus trichocarpa POPTR_0001s28000 N 0.706
cassava30358.valid.m1 Manihot esculenta cassava30358.valid.m1 N 0.706
BGIOSIBCE013412 Oryza indica BGIOSIBCE013412 N 0.706
BRADI1G04240 Brachypodium distachyon BRADI1G04240 N 0.706
PKH_144160 Plasmodium knowlesi PKH_144160 N 0.706
PFL1200c Plasmodium falciparum PFL1200c N 0.706
29868.m000351 Ricinus communis 29868.m000351 N 0.706
LOC_Os03g59710 Oryza sativa LOC_Os03g59710 N 0.706
PVX_123875 Plasmodium vivax PVX_123875 N 0.706
ppa013407m Prunus persica ppa013407m N 0.706
estExt_GenewiseW_1.C_340090 Chlamydomonas reinhardtii estExt_GenewiseW_1.C_340090 N 0.706
eugene.1500010066 Ostreococcus lucimarinus eugene.1500010066 N 0.706
1600010087 Ostreococcus tauri 1600010087 N 0.706
ENSCHOG00000013886 Choloepus hoffmanni ENSCHOG00000013886 N 0.706
GSPATP00010032001 Paramecium tetraurelia GSPATP00010032001 N 0.706
estExt_fgenesh2_pg.C_240194 Selaginella moellendorfii estExt_fgenesh2_pg.C_240194 N 0.706
GSVIVG00037329001 Vitis vinifera GSVIVG00037329001 N 0.706
ppa013405m Prunus persica ppa013405m N 0.706
MDP0000185506 Malus x domestica MDP0000185506 N 0.706
Glyma14g04020.1 Glycine max Glyma14g04020.1 N 0.706