estExt_GenewiseW_1.C_340090 (Chlamydomonas reinhardtii)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_GenewiseW_1.C_340090 T51578_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_GenewiseW_1.C_340090 RRM 21 88

Links

Other RRM family RBPs
Other Chlamydomonas reinhardtii RBPs

117 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
e_gw1.17.197.1 Volvox carteri e_gw1.17.197.1 N 0.956
B9HNI9_POPTR Populus trichocarpa POPTR_0009s07180 N 0.897
29868.m000351 Ricinus communis 29868.m000351 N 0.882
cassava30358.valid.m1 Manihot esculenta cassava30358.valid.m1 N 0.882
MDP0000185506 Malus x domestica MDP0000185506 N 0.882
ppa013407m Prunus persica ppa013407m N 0.882
PK21780.1 Cannabis sativa PK21780.1 N 0.882
B9GG60_POPTR Populus trichocarpa POPTR_0001s28000 N 0.882
ppa013405m Prunus persica ppa013405m N 0.882
GSVIVG00037329001 Vitis vinifera GSVIVG00037329001 N 0.882
estExt_Genemark1.C_140122 Coccomyxa C 169 estExt_Genemark1.C_140122 N 0.868
BRADI1G04240 Brachypodium distachyon BRADI1G04240 N 0.868
estExt_fgeneshCV_pm.C_140033 Chlorella vulgaris estExt_fgeneshCV_pm.C_140033 N 0.868
estExt_Genewise1.C_630098 Physcomitrella patens estExt_Genewise1.C_630098 N 0.868
Cucsa.086930 Cucumis sativus Cucsa.086930 N 0.855
SB01G003790 Sorghum bicolor Sb01g003790 N 0.853
GRMZM2G107745 Zea mays GRMZM2G107745 N 0.853
Glyma14g04020.1 Glycine max Glyma14g04020.1 N 0.853
GRMZM2G358416 Zea mays GRMZM2G358416 N 0.853
chr2.CM0308.280.nc Lotus japonicus chr2.CM0308.280.nc N 0.841
Glyma02g44710.1 Glycine max Glyma02g44710.1 N 0.841
Medtr5g096400 Medicago truncatula Medtr5g096400 N 0.841
estExt_Genewise1Plus.C_10491 Micromonas pusilla estExt_Genewise1Plus.C_10491 N 0.838
estExt_fgenesh2_pg.C_240194 Selaginella moellendorfii estExt_fgenesh2_pg.C_240194 N 0.838
BGIOSIBCE013412 Oryza indica BGIOSIBCE013412 N 0.838
LOC_Os03g59710 Oryza sativa LOC_Os03g59710 N 0.838
MDP0000916880 Malus x domestica MDP0000916880 N 0.838
mgf016428m Mimulus guttatus mgf016428m N 0.826
AT5G12190 Arabidopsis thaliana AT5G12190-TAIR-G N 0.797
XM_002873508.1 Arabidopsis lyrata scaffold_601250.1 N 0.797
ENSTNIG00000009719 Tetraodon nigroviridis ENSTNIG00000009719 N 0.794
AAEL005909 Aedes aegypti AAEL005909 N 0.794
ENSTRUG00000006551 Takifugu rubripes ENSTRUG00000006551 N 0.794
CPIJ008576 Culex quinquefasciatus CPIJ008576 N 0.794
ENSGACG00000004803 Gasterosteus aculeatus ENSGACG00000004803 N 0.794
CpipJ_CPIJ008576 Culex pipiens CpipJ_CPIJ008576 N 0.794
ENSOANG00000007627 Ornithorhynchus anatinus ENSOANG00000007627 N 0.779
ENSOCUG00000022008 Oryctolagus cuniculus ENSOCUG00000022008 N 0.779
ENSORLG00000015955 Oryzias latipes ENSORLG00000015955 N 0.779
ENSPPYG00000012603 Pongo pygmaeus ENSPPYG00000012603 N 0.779
XM_515324.2 Pan troglodytes ENSPTRG00000011709 N 0.779
ENSMLUG00000002473 Myotis lucifugus ENSMLUG00000002473 N 0.779
0610009D07Rik Mus musculus ENSMUSG00000037361 N 0.779
ENSMGAG00000014057 Meleagris gallopavo ENSMGAG00000014057 N 0.779
eugene.1500010066 Ostreococcus lucimarinus eugene.1500010066 N 0.779
XM_001098393.1 Macaca mulatta ENSMMUG00000001282 N 0.779
ENSTSYG00000013978 Tarsius syrichta ENSTSYG00000013978 N 0.779
ENSVPAG00000005546 Vicugna pacos ENSVPAG00000005546 N 0.779
sf3b14 Xenopus tropicalis ENSXETG00000018204 N 0.779
SF3B14 Gallus gallus ENSGALG00000016501 N 0.779
ISCW024082 Ixodes scapularis ISCW024082 N 0.779
ENSTTRG00000013430 Tursiops truncatus ENSTTRG00000013430 N 0.779
SF3B14 Taeniopygia guttata ENSTGUG00000013191 N 0.779
ENSSARG00000011902 Sorex araneus ENSSARG00000011902 N 0.779
ENSSSCG00000008587 Sus scrofa ENSSSCG00000008587 N 0.779
ENSTBEG00000012532 Tupaia belangeri ENSTBEG00000012532 N 0.779
ENSPVAG00000011346 Pteropus vampyrus ENSPVAG00000011346 N 0.779
ENSLAFG00000029423 Loxodonta africana ENSLAFG00000029423 N 0.779
Q2KIQ7_BOVIN Bos taurus ENSBTAG00000003407 N 0.779
XM_532889.2 Canis familiaris ENSCAFG00000003957 N 0.779
ENSCHOG00000000689 Choloepus hoffmanni ENSCHOG00000000689 N 0.779
AC008073.5 Homo sapiens ENSG00000115128 N 0.779
AGAP002780 Anopheles gambiae AGAP002780 N 0.779
AAH57709 Xenopus laevis AAH57709 N 0.779
SPRG_00106 Saprolegnia parasitica SPRG_00106 N 0.779
Ame_R001592 Ailuropoda melanoleuca Ame_R001592 N 0.779
LOC100386467 Callithrix jacchus ENSCJAG00000007716 N 0.779
ENSACAG00000011677 Anolis carolinensis ENSACAG00000011677 N 0.779
ENSDNOG00000007148 Dasypus novemcinctus ENSDNOG00000007148 N 0.779
ENSFCAG00000004304 Felis catus ENSFCAG00000004304 N 0.779
0610009D07Rik Dipodomys ordii ENSDORG00000009772 N 0.779
sf3b14 Danio rerio ENSDARG00000009753 N 0.779
LOC100056247 Equus caballus ENSECAG00000015618 N 0.779
ENSCPOG00000008016 Cavia porcellus ENSCPOG00000008016 N 0.779
Smp_032060 Schistosoma mansoni Smp_032060 N 0.765
XM_001364269.1 Monodelphis domestica ENSMODG00000002144 N 0.765
estExt_GenewiseH_1.C_6800062 Branchiostoma floridae estExt_GenewiseH_1.C_6800062 N 0.765
XP_002160322.1 Hydra magnipapillata XP_002160322.1 N 0.765
Sjc_0071370 Schistosoma japonicum Sjc_0071370 N 0.765
GJ12004 Drosophila virilis FBgn0199256 N 0.754
GM13852 Drosophila sechellia FBgn0168783 N 0.754
GK17258 Drosophila willistoni FBgn0219257 N 0.754
GD13137 Drosophila simulans FBgn0184859 N 0.754
estExt_fgenesh1_pg.C_130126 Phytophthora capsici estExt_fgenesh1_pg.C_130126 N 0.754
estExt_fgenesh1_kg.C_20004 Daphnia pulex estExt_fgenesh1_kg.C_20004 N 0.754
s_454910 Phytophthora sojae s_454910 N 0.754
PITG_10282 Phytophthora infestans PITG_10282 N 0.754
GL22529 Drosophila persimilis FBgn0160121 N 0.754
CG13298 Drosophila melanogaster FBgn0035692 N 0.754
GI13232 Drosophila mojavensis FBgn0135989 N 0.754
GE20495 Drosophila yakuba FBgn0068445 N 0.754
GA12181-RA Drosophila pseudoobscura FBgn0072229 N 0.754
GG14070 Drosophila erecta FBgn0106332 N 0.754
GH16287 Drosophila grimshawi FBgn0123758 N 0.754
GF10910 Drosophila ananassae FBgn0087950 N 0.754
nasonia_NCBI_hmm648054 Nasonia vitripennis nasonia_NCBI_hmm648054 N 0.750
Aqu1.214150 Amphimedon queenslandica Aqu1.214150 N 0.750
amel4_ncbi_hmm5835 Tribolium castaneum amel4_ncbi_hmm5835 N 0.750
ENSCING00000012689 Ciona intestinalis ENSCING00000012689 N 0.750
nasonia_NCBI_hmm146063 Nasonia vitripennis nasonia_NCBI_hmm146063 N 0.750
amel4_ncbi_hmm5835 Apis mellifera amel4_ncbi_hmm5835 N 0.750
ENSCSAVG00000008970 Ciona savignyi ENSCSAVG00000008970 N 0.750
PHUM617060 Pediculus humanus PHUM617060 N 0.750
fgenesh1_pm.C_scaffold_108000003 Phytophthora ramorum fgenesh1_pm.C_scaffold_108000003 N 0.739
estExt_Genewise1Plus.C_10695 Chlorella NC64A estExt_Genewise1Plus.C_10695 N 0.735
e_gw1.11.964.1 Ostreococcus RCC809 e_gw1.11.964.1 N 0.735
DGIL_AUG5s10565g5t1 Acyrtosiphon pisum DGIL_AUG5s10565g5t1 N 0.735
1600010087 Ostreococcus tauri 1600010087 N 0.735
68671 Helobdella robusta 68671 N 0.721
Minc01156 Meloidogyne incognita Minc01156 N 0.721
GSPATP00010032001 Paramecium tetraurelia GSPATP00010032001 N 0.721
GSPATP00004048001 Paramecium tetraurelia GSPATP00004048001 N 0.721
e_gw1.13.49.1 Emiliania huxleyi e_gw1.13.49.1 N 0.710
RO3G_04631 Rhizopus oryzae RO3G_04631 N 0.710
estExt_fgenesh1_pg.C_1580052 Nematostella vectensis estExt_fgenesh1_pg.C_1580052 N 0.706
estExt_fgenesh2_kg.C_sca_670005 Lottia gigantea estExt_fgenesh2_kg.C_sca_670005 N 0.706
SNAPOd2T00023714001 Oikopleura dioica SNAPOd2T00023714001 N 0.706