RBM47 (Macropus eugenii)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSMEUG00000009516 T38232_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ENSGALG00000014267
M234_0.6 		Gallus gallus GAUGAW RNAcompete
Ray et al.(2013)
RNCMPT00279 		0.960
ENSXETG00000012802
M235_0.6 		Xenopus tropicalis GAUGAWH RNAcompete
Ray et al.(2013)
RNCMPT00280 		0.931
RBM46
M052_0.6 		Homo sapiens RAUSAWD RNAcompete
Ray et al.(2013)
RNCMPT00054 		0.735
ENSGALG00000003765
M244_0.6 		Gallus gallus DUAAUUV RNAcompete
Ray et al.(2013)
RNCMPT00291 		0.700
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSMEUP00000008682 RRM 58 126
ENSMEUP00000008682 RRM 138 205
ENSMEUP00000008682 RRM 233 297

Links

Other RRM family RBPs
Other Macropus eugenii RBPs

101 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ame_R017652 Ailuropoda melanoleuca Ame_R017652 I 0.960
Ame_R017773 Ailuropoda melanoleuca Ame_R017773 I 0.752
RBM47 Anolis carolinensis ENSACAG00000011833 I 0.950
RBM46 Anolis carolinensis ENSACAG00000015599 I 0.748
RBM46 Bos taurus ENSBTAG00000001696 I 0.752
A5D9E0_BOVIN Bos taurus ENSBTAG00000002356 I 0.960
A1CF Bos taurus ENSBTAG00000021195 I 0.704
RBM46 Canis familiaris ENSCAFG00000008473 I 0.752
RBM47_CANFA Canis familiaris ENSCAFG00000015898 I 0.950
RBM46 Choloepus hoffmanni ENSCHOG00000003429 I 0.752
A1CF Choloepus hoffmanni ENSCHOG00000009089 I 0.704
RBM47 Choloepus hoffmanni ENSCHOG00000011731 I 0.970
ENSCING00000004101 Ciona intestinalis ENSCING00000004101 I 0.728
LOC100409217 Callithrix jacchus ENSCJAG00000001768 I 0.752
A1CF Callithrix jacchus ENSCJAG00000005045 I 0.704
LOC100410421 Callithrix jacchus ENSCJAG00000019385 I 0.970
ENSCJAG00000034583 Callithrix jacchus ENSCJAG00000034583 I 0.730
A1CF Cavia porcellus ENSCPOG00000009807 I 0.704
ENSCPOG00000010284 Cavia porcellus ENSCPOG00000010284 I 0.738
RBM47 Cavia porcellus ENSCPOG00000014100 I 0.960
ENSCPOG00000019272 Cavia porcellus ENSCPOG00000019272 I 0.723
ENSCPOG00000020396 Cavia porcellus ENSCPOG00000020396 I 0.744
ENSCSAVG00000000326 Ciona savignyi ENSCSAVG00000000326 I 0.738
a1cf Danio rerio ENSDARG00000002968 I 0.709
RBM47 Danio rerio ENSDARG00000061985 I 0.906
rbm46 Danio rerio ENSDARG00000079452 I 0.708
RBM47 Dasypus novemcinctus ENSDNOG00000006858 I 0.970
RBM46 Dasypus novemcinctus ENSDNOG00000016195 I 0.748
Rbm46 Dipodomys ordii ENSDORG00000006405 I 0.718
Rbm47 Dipodomys ordii ENSDORG00000010144 I 0.837
LOC100063743 Equus caballus ENSECAG00000004400 I 0.946
RBM46 Equus caballus ENSECAG00000007649 I 0.754
RBM46 Erinaceus europaeus ENSEEUG00000011824 I 0.738
RBM47 Echinops telfairi ENSETEG00000009194 I 0.970
RBM46 Echinops telfairi ENSETEG00000014902 I 0.752
RBM46 Felis catus ENSFCAG00000009246 I 0.743
RBM47 Felis catus ENSFCAG00000012399 I 0.960
RBM46 Homo sapiens ENSG00000151962 D 0.752
RBM47 Homo sapiens ENSG00000163694 I 0.970
A1CF Gasterosteus aculeatus ENSGACG00000010241 I 0.709
RBM47 Gasterosteus aculeatus ENSGACG00000016223 I 0.906
ENSGALG00000003765 Gallus gallus ENSGALG00000003765 D 0.700
ENSGALG00000014267 Gallus gallus ENSGALG00000014267 D 0.960
RBM47 Gorilla gorilla ENSGGOG00000001367 I 0.970
RBM46 Gorilla gorilla ENSGGOG00000001876 I 0.752
RBM47 Loxodonta africana ENSLAFG00000011998 I 0.965
RBM46 Loxodonta africana ENSLAFG00000015448 I 0.752
A1CF Loxodonta africana ENSLAFG00000015462 I 0.704
RBM46 Macropus eugenii ENSMEUG00000013328 I 0.752
RBM47 Meleagris gallopavo ENSMGAG00000012226 I 0.960
RBM46 Myotis lucifugus ENSMLUG00000003221 I 0.748
A1CF Macaca mulatta ENSMMUG00000007077 I 0.704
RBM47 Macaca mulatta ENSMMUG00000012036 I 0.970
RBM46 Macaca mulatta ENSMMUG00000021147 I 0.752
RBM46 Monodelphis domestica ENSMODG00000001302 I 0.752
ENSMODG00000007003 Monodelphis domestica ENSMODG00000007003 I 1.000
ENSMODG00000015426 Monodelphis domestica ENSMODG00000015426 I 0.857
XM_001362366.1 Monodelphis domestica ENSMODG00000020561 I 0.901
Rbm46 Mus musculus ENSMUSG00000033882 I 0.752
A1cf Mus musculus ENSMUSG00000052595 I 0.704
Rbm47 Mus musculus ENSMUSG00000070780 I 0.965
RBM46 Ornithorhynchus anatinus ENSOANG00000002141 I 0.724
RBM47 Ornithorhynchus anatinus ENSOANG00000008978 I 0.975
A1CF Oryctolagus cuniculus ENSOCUG00000011587 I 0.704
RBM47 Oryctolagus cuniculus ENSOCUG00000012034 I 0.965
RBM46 Oryctolagus cuniculus ENSOCUG00000017859 I 0.752
RBM47 Oryzias latipes ENSORLG00000005847 I 0.911
RBM47 Procavia capensis ENSPCAG00000011879 I 0.970
ENSPPYG00000002819 Pongo pygmaeus ENSPPYG00000002819 I 0.704
ENSPPYG00000014688 Pongo pygmaeus ENSPPYG00000014688 I 0.951
ENSPPYG00000015144 Pongo pygmaeus ENSPPYG00000015144 I 0.752
RBM47 Pan troglodytes ENSPTRG00000016006 I 0.970
RBM46 Pan troglodytes ENSPTRG00000016538 I 0.752
RBM47 Pteropus vampyrus ENSPVAG00000003812 I 0.955
RBM46 Pteropus vampyrus ENSPVAG00000008376 I 0.752
Rbm47 Rattus norvegicus ENSRNOG00000002408 I 0.960
Rbm46 Rattus norvegicus ENSRNOG00000025823 I 0.752
RBM47 Sorex araneus ENSSARG00000001735 I 0.970
RBM46 Sorex araneus ENSSARG00000006520 I 0.752
RBM47 Sus scrofa ENSSSCG00000008796 I 0.960
RBM46 Sus scrofa ENSSSCG00000008994 I 0.752
A1CF Sus scrofa ENSSSCG00000010431 I 0.709
RBM47 Spermophilus tridecemlineatus ENSSTOG00000004727 I 0.881
RBM47 Tupaia belangeri ENSTBEG00000001607 I 0.856
RBM46 Tupaia belangeri ENSTBEG00000013949 I 0.743
A1CF Taeniopygia guttata ENSTGUG00000005090 I 0.704
RBM46 Taeniopygia guttata ENSTGUG00000005307 I 0.718
RBM47 Taeniopygia guttata ENSTGUG00000008705 I 0.960
A1CF Tetraodon nigroviridis ENSTNIG00000003580 I 0.709
RBM47 Tetraodon nigroviridis ENSTNIG00000006127 I 0.911
A1CF Takifugu rubripes ENSTRUG00000001982 I 0.718
RBM47 Takifugu rubripes ENSTRUG00000014050 I 0.911
A1CF Tarsius syrichta ENSTSYG00000001755 I 0.709
RBM46 Tarsius syrichta ENSTSYG00000010435 I 0.752
RBM46 Tursiops truncatus ENSTTRG00000001239 I 0.748
RBM47 Tursiops truncatus ENSTTRG00000002839 I 0.965
ENSXETG00000012802 Xenopus tropicalis ENSXETG00000012802 D 0.931
estExt_Genewise1Plus.C_20056 Capitella teleta estExt_Genewise1Plus.C_20056 I 0.717
e_gw.262.16.1 Branchiostoma floridae e_gw.262.16.1 I 0.745
e_gw.262.30.1 Branchiostoma floridae e_gw.262.30.1 I 0.734
e_gw.60.249.1 Branchiostoma floridae e_gw.60.249.1 I 0.739