CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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RALY
(
Meleagris gallopavo
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSMGAG00000002214
T38322_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
RALY
M150_0.6
Homo sapiens
UUUUUUB
RNAcompete
Ray et al.(2013)
RNCMPT00159
0.969
HNRNPC
M025_0.6
Homo sapiens
HUUUUUK
RNAcompete
Ray et al.(2013)
RNCMPT00025
0.812
HNRNPCL1
M158_0.6
Homo sapiens
HUUUUUK
RNAcompete
Ray et al.(2013)
RNCMPT00167
0.734
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMGAP00000001767
RRM
23
86
VFIGNLNTAVVKKSDVETIFSKYGRVVGCSVHKGYAFVQYSNERHARAAVLGENGRVLAGQTLD
Links
Other
RRM
family RBPs
Other
Meleagris gallopavo
RBPs
130 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AKAP17A
Anolis carolinensis
ENSACAG00000005956
N
0.000
SFRS17A
Gallus gallus
ENSGALG00000016686
N
0.000
AKAP17A
Meleagris gallopavo
ENSMGAG00000014740
N
0.000
XM_001362178.1
Monodelphis domestica
ENSMODG00000000082
N
0.000
SFRS17A
Taeniopygia guttata
ENSTGUG00000010729
N
0.000