HNRNPC (Sorex araneus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSSARG00000003711 T41294_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPC
M025_0.6 		Homo sapiens HUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00025 		1.000
HNRNPCL1
M158_0.6 		Homo sapiens HUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00167 		0.906
RALY
M150_0.6 		Homo sapiens UUUUUUB RNAcompete
Ray et al.(2013)
RNCMPT00159 		0.781
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSSARP00000003341 RRM 18 81

Links

Other RRM family RBPs
Other Sorex araneus RBPs

130 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAB50269 Xenopus laevis AAB50269 N 0.000
AAH41291 Xenopus laevis AAH41291 N 0.000
AAH80037 Xenopus laevis AAH80037 N 0.000
Ame_R018612 Ailuropoda melanoleuca Ame_R018612 N 0.000
Bm1_06205 Brugia malayi Bm1_06205 N 0.000
ENSACAG00000004388 Anolis carolinensis ENSACAG00000004388 N 0.000
CSTF2_BOVIN Bos taurus ENSBTAG00000003547 N 0.000
CSTF2T Canis familiaris ENSCAFG00000015567 N 0.000
CSTF2 Canis familiaris ENSCAFG00000017551 N 0.000
CSTF2T Choloepus hoffmanni ENSCHOG00000011888 N 0.000
CSTF2 Callithrix jacchus ENSCJAG00000004422 N 0.000
CSTF2T Callithrix jacchus ENSCJAG00000005033 N 0.000
ENSCPOG00000004195 Cavia porcellus ENSCPOG00000004195 N 0.000
CSTF2 Cavia porcellus ENSCPOG00000015255 N 0.000
cstf2 Danio rerio ENSDARG00000044009 N 0.000
CSTF2 Equus caballus ENSECAG00000009325 N 0.000
CSTF2 Felis catus ENSFCAG00000007000 N 0.000
CSTF2T Felis catus ENSFCAG00000013011 N 0.000
CSTF2 Homo sapiens ENSG00000101811 N 0.000
CSTF2T Homo sapiens ENSG00000177613 N 0.000
CSTF2 Gasterosteus aculeatus ENSGACG00000017326 N 0.000
Q5ZLS0_CHICK Gallus gallus ENSGALG00000006760 N 0.000
ENSGGOG00000022117 Gorilla gorilla ENSGGOG00000022117 N 0.000
CSTF2 Gorilla gorilla ENSGGOG00000022267 N 0.000
ENSGGOG00000026139 Gorilla gorilla ENSGGOG00000026139 N 0.000
CSTF2 Loxodonta africana ENSLAFG00000000474 N 0.000
CSTF2T Loxodonta africana ENSLAFG00000002058 N 0.000
ENSMEUG00000007875 Macropus eugenii ENSMEUG00000007875 N 0.000
ENSMEUG00000011186 Macropus eugenii ENSMEUG00000011186 N 0.000
CSTF2 Microcebus murinus ENSMICG00000014121 N 0.000
CSTF2 Myotis lucifugus ENSMLUG00000004598 N 0.000
CSTF2T Myotis lucifugus ENSMLUG00000011187 N 0.000
CSTF2T Macaca mulatta ENSMMUG00000010845 N 0.000
CSTF2 Macaca mulatta ENSMMUG00000013008 N 0.000
ENSMODG00000011785 Monodelphis domestica ENSMODG00000011785 N 0.000
Cstf2 Mus musculus ENSMUSG00000031256 N 0.000
Cstf2t Mus musculus ENSMUSG00000053536 N 0.000
CSTF2 Oryctolagus cuniculus ENSOCUG00000010468 N 0.000
CSTF2 Oryzias latipes ENSORLG00000001380 N 0.000
CSTF2T Procavia capensis ENSPCAG00000000046 N 0.000
ENSPPYG00000002441 Pongo pygmaeus ENSPPYG00000002441 N 0.000
ENSPPYG00000020541 Pongo pygmaeus ENSPPYG00000020541 N 0.000
CSTF2T Pan troglodytes ENSPTRG00000002510 N 0.000
CSTF2 Pan troglodytes ENSPTRG00000022090 N 0.000
CSTF2T Pteropus vampyrus ENSPVAG00000006274 N 0.000
D3ZKA4_RAT Rattus norvegicus ENSRNOG00000022436 N 0.000
CSTF2T Sorex araneus ENSSARG00000002013 N 0.000
ENSSSCG00000009884 Sus scrofa ENSSSCG00000009884 N 0.000
ENSSSCG00000010430 Sus scrofa ENSSSCG00000010430 N 0.000
CSTF2 Sus scrofa ENSSSCG00000012486 N 0.000
CSTF2T Spermophilus tridecemlineatus ENSSTOG00000005624 N 0.000
CSTF2 Taeniopygia guttata ENSTGUG00000002253 N 0.000
CSTF2 Tetraodon nigroviridis ENSTNIG00000016860 N 0.000
CSTF2 Takifugu rubripes ENSTRUG00000004323 N 0.000
CSTF2T Tursiops truncatus ENSTTRG00000003341 N 0.000
CSTF2 Tursiops truncatus ENSTTRG00000013556 N 0.000
cstf2 Xenopus tropicalis ENSXETG00000009642 N 0.000
estExt_Genewise1.C_230050 Postia placenta estExt_Genewise1.C_230050 N 0.000
estExt_Genewise1.C_550102 Capitella teleta estExt_Genewise1.C_550102 N 0.000
e_gw.312.28.1 Nematostella vectensis e_gw.312.28.1 N 0.000
e_gw.65.105.1 Branchiostoma floridae e_gw.65.105.1 N 0.000
e_gw.65.110.1 Branchiostoma floridae e_gw.65.110.1 N 0.000
ISCW015573 Ixodes scapularis ISCW015573 N 0.000
LOAG_12614 Loa loa LOAG_12614 N 0.000
Ppa-cpf-2 Pristionchus pacificus PPA07031 N 0.000