CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Zcchc17
(
Mus musculus
)
S1
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00575 (S1)
IPR003029
ENSMUSG00000028772
T60455_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMUSP00000101617
S1
13
86
PALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSLS
ENSMUSP00000120807
S1
1
45
XLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSLS
Links
Other
S1
family RBPs
Other
Mus musculus
RBPs
38 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Cucsa.142970
Cucumis sativus
Cucsa.142970
N
0.000
Cucsa.242740
Cucumis sativus
Cucsa.242740
N
0.000
Cucsa.263980
Cucumis sativus
Cucsa.263980
N
0.000
GRMZM2G071034
Zea mays
GRMZM2G071034
N
0.000
GRMZM2G110402
Zea mays
GRMZM2G110402
N
0.000
GRMZM2G124476
Zea mays
GRMZM2G124476
N
0.000
GRMZM2G151689
Zea mays
GRMZM2G151689
N
0.000
GSVIVG00001369001
Vitis vinifera
GSVIVG00001369001
N
0.000
GSVIVG00025360001
Vitis vinifera
GSVIVG00025360001
N
0.000
GSVIVG00033508001
Vitis vinifera
GSVIVG00033508001
N
0.000
LOC_Os02g10080
Oryza sativa
LOC_Os02g10080
N
0.000
LOC_Os04g57010
Oryza sativa
LOC_Os04g57010
N
0.000
PDK_20s1321721g007
Phoenix dactylifera
PDK_20s1321721g007
N
0.000
B9GLM3_POPTR
Populus trichocarpa
POPTR_0001s05070
N
0.000
B9GYL2_POPTR
Populus trichocarpa
POPTR_0003s21780
N
0.000
Sb10g024330
Sorghum bicolor
Sb10g024330
N
0.000