Cucsa.142970 (Cucumis sativus)
CCCH ZF,KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00013 (KH_1) 		IPR000571
IPR018111 		Cucsa.142970 T00191_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.142970.1 CCCH ZF 38 62
Cucsa.142970.1 CCCH ZF 101 126
Cucsa.142970.1 KH 175 237
Cucsa.142970.1 CCCH ZF 275 300
Cucsa.142970.2 CCCH ZF 28 53
Cucsa.142970.2 KH 102 164
Cucsa.142970.2 CCCH ZF 202 227

Links

Other CCCH ZF,KH family RBPs
Other Cucumis sativus RBPs

51 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa009199m Prunus persica ppa009199m N 0.836
Glyma02g29360.1 Glycine max Glyma02g29360.1 N 0.821
ppa009316m Prunus persica ppa009316m N 0.814
chr1.LjT38A19.100.nc Lotus japonicus chr1.LjT38A19.100.nc N 0.814
Glyma19g32910.1 Glycine max Glyma19g32910.1 N 0.814
cassava23831.valid.m1 Manihot esculenta cassava23831.valid.m1 N 0.809
Glyma03g30020.1 Glycine max Glyma03g30020.1 N 0.807
Glyma20g39160.1 Glycine max Glyma20g39160.1 N 0.807
Glyma03g30030.1 Glycine max Glyma03g30030.1 N 0.807
Glyma10g44330.1 Glycine max Glyma10g44330.1 N 0.807
BGIOSIBCE005985 Oryza indica BGIOSIBCE005985 N 0.796
LOC_Os02g10080 Oryza sativa LOC_Os02g10080 N 0.796
Cucsa.263980 Cucumis sativus Cucsa.263980 N 0.793
Cucsa.242740 Cucumis sativus Cucsa.242740 N 0.786
BRADI5G25340 Brachypodium distachyon BRADI5G25340 N 0.780
MDP0000263392 Malus x domestica MDP0000263392 N 0.774
LOC_Os04g57010 Oryza sativa LOC_Os04g57010 N 0.773
cassava36490.valid.m1 Manihot esculenta cassava36490.valid.m1 N 0.771
27843.m000162 Ricinus communis 27843.m000162 N 0.771
Medtr7g111840 Medicago truncatula Medtr7g111840 N 0.768
BRADI1G35920 Brachypodium distachyon BRADI1G35920 N 0.768
PDK_20s1321721g007 Phoenix dactylifera PDK_20s1321721g007 N 0.765
MDP0000217837 Malus x domestica MDP0000217837 N 0.764
27843.m000161 Ricinus communis 27843.m000161 N 0.764
GRMZM2G071034 Zea mays GRMZM2G071034 N 0.764
mgf003025m Mimulus guttatus mgf003025m N 0.764
BRADI3G06940 Brachypodium distachyon BRADI3G06940 N 0.762
SB04G006450 Sorghum bicolor Sb04g006450 N 0.757
LOC_Os06g41384 Oryza sativa LOC_Os06g41384 N 0.754
SB06G032000 Sorghum bicolor Sb06g032000 N 0.752
GRMZM2G124476 Zea mays GRMZM2G124476 N 0.752
B9GYL2_POPTR Populus trichocarpa POPTR_0003s21780 N 0.748
GRMZM2G151689 Zea mays GRMZM2G151689 N 0.741
POPTR_0016s04590 Populus trichocarpa POPTR_0016s04590 N 0.739
GRMZM2G110402 Zea mays GRMZM2G110402 N 0.739
Sb10g024330 Sorghum bicolor Sb10g024330 N 0.739
B9IHZ7_POPTR Populus trichocarpa POPTR_0016s04690 N 0.739
mgf001428m Mimulus guttatus mgf001428m N 0.730
B9GLM3_POPTR Populus trichocarpa POPTR_0001s05070 N 0.730
MDP0000275117 Malus x domestica MDP0000275117 N 0.729
Medtr1g147310 Medicago truncatula Medtr1g147310 N 0.729
MDP0000120315 Malus x domestica MDP0000120315 N 0.729
MDP0000130160 Malus x domestica MDP0000130160 N 0.729
GSVIVG00025360001 Vitis vinifera GSVIVG00025360001 N 0.724
estExt_gwp_gw1.C_590273 Physcomitrella patens estExt_gwp_gw1.C_590273 N 0.723
MDP0000202971 Malus x domestica MDP0000202971 N 0.721
MDP0000176924 Malus x domestica MDP0000176924 N 0.721
BGIOSIBCE016974 Oryza indica BGIOSIBCE016974 N 0.709
cassava14774.m1 Manihot esculenta cassava14774.m1 N 0.707
GSVIVG00033508001 Vitis vinifera GSVIVG00033508001 N 0.707
GRMZM2G056920 Zea mays GRMZM2G056920 N 0.704