GRMZM2G151689 (Zea mays)
CCCH ZF,KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00013 (KH_1) 		IPR000571
IPR018111 		GRMZM2G151689 T00215_0.6 MaizeSequence (2009-Oct-16)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
GRMZM2G151689_P01 CCCH ZF 34 60
GRMZM2G151689_P01 CCCH ZF 100 126
GRMZM2G151689_P01 KH 173 235
GRMZM2G151689_P01 CCCH ZF 269 294
GRMZM2G151689_P04 CCCH ZF 31 57
GRMZM2G151689_P04 KH 104 166
GRMZM2G151689_P04 CCCH ZF 200 225

Links

Other CCCH ZF,KH family RBPs
Other Zea mays RBPs

47 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Sb10g024330 Sorghum bicolor Sb10g024330 N 0.966
GRMZM2G110402 Zea mays GRMZM2G110402 N 0.966
LOC_Os06g41384 Oryza sativa LOC_Os06g41384 N 0.916
BRADI1G35920 Brachypodium distachyon BRADI1G35920 N 0.902
BRADI3G06940 Brachypodium distachyon BRADI3G06940 N 0.888
LOC_Os02g10080 Oryza sativa LOC_Os02g10080 N 0.888
BGIOSIBCE005985 Oryza indica BGIOSIBCE005985 N 0.874
BGIOSIBCE022629 Oryza indica BGIOSIBCE022629 N 0.846
cassava23831.valid.m1 Manihot esculenta cassava23831.valid.m1 N 0.825
ppa009199m Prunus persica ppa009199m N 0.818
SB04G006450 Sorghum bicolor Sb04g006450 N 0.818
PDK_20s1321721g007 Phoenix dactylifera PDK_20s1321721g007 N 0.810
LOC_Os04g57010 Oryza sativa LOC_Os04g57010 N 0.810
Cucsa.242740 Cucumis sativus Cucsa.242740 N 0.802
B9GLM3_POPTR Populus trichocarpa POPTR_0001s05070 N 0.802
Glyma02g29360.1 Glycine max Glyma02g29360.1 N 0.797
Cucsa.263980 Cucumis sativus Cucsa.263980 N 0.797
Glyma20g39160.1 Glycine max Glyma20g39160.1 N 0.797
BRADI5G25340 Brachypodium distachyon BRADI5G25340 N 0.797
Glyma19g32910.1 Glycine max Glyma19g32910.1 N 0.797
Glyma03g30020.1 Glycine max Glyma03g30020.1 N 0.797
Glyma03g30030.1 Glycine max Glyma03g30030.1 N 0.797
Glyma10g44330.1 Glycine max Glyma10g44330.1 N 0.797
MDP0000263392 Malus x domestica MDP0000263392 N 0.793
27843.m000162 Ricinus communis 27843.m000162 N 0.790
chr1.LjT38A19.100.nc Lotus japonicus chr1.LjT38A19.100.nc N 0.790
SB06G032000 Sorghum bicolor Sb06g032000 N 0.790
ppa009316m Prunus persica ppa009316m N 0.790
B9GYL2_POPTR Populus trichocarpa POPTR_0003s21780 N 0.784
GRMZM2G071034 Zea mays GRMZM2G071034 N 0.784
Medtr7g111840 Medicago truncatula Medtr7g111840 N 0.783
27843.m000161 Ricinus communis 27843.m000161 N 0.776
GRMZM2G124476 Zea mays GRMZM2G124476 N 0.776
cassava36490.valid.m1 Manihot esculenta cassava36490.valid.m1 N 0.769
mgf003025m Mimulus guttatus mgf003025m N 0.748
Cucsa.142970 Cucumis sativus Cucsa.142970 N 0.741
MDP0000217837 Malus x domestica MDP0000217837 N 0.741
GRMZM2G056920 Zea mays GRMZM2G056920 N 0.738
mgf010445m Mimulus guttatus mgf010445m N 0.734
B9IHZ7_POPTR Populus trichocarpa POPTR_0016s04690 N 0.727
POPTR_0016s04590 Populus trichocarpa POPTR_0016s04590 N 0.727
BGIOSIBCE016974 Oryza indica BGIOSIBCE016974 N 0.727
MDP0000120315 Malus x domestica MDP0000120315 N 0.720
MDP0000130160 Malus x domestica MDP0000130160 N 0.720
MDP0000275117 Malus x domestica MDP0000275117 N 0.720
cassava14774.m1 Manihot esculenta cassava14774.m1 N 0.713
GSVIVG00025360001 Vitis vinifera GSVIVG00025360001 N 0.707