GRMZM2G110402 (Zea mays)
CCCH ZF,KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00013 (KH_1) 		IPR000571
IPR018111 		GRMZM2G110402 T00213_0.6 MaizeSequence (2009-Oct-16)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
GRMZM2G110402_P01 CCCH ZF 32 57
GRMZM2G110402_P01 KH 104 166
GRMZM2G110402_P01 CCCH ZF 200 225
GRMZM2G110402_P02 CCCH ZF 32 58
GRMZM2G110402_P02 CCCH ZF 99 124
GRMZM2G110402_P02 KH 171 233
GRMZM2G110402_P02 CCCH ZF 267 292
GRMZM2G110402_P03 CCCH ZF 32 58
GRMZM2G110402_P03 CCCH ZF 99 124
GRMZM2G110402_P03 KH 171 233
GRMZM2G110402_P03 CCCH ZF 267 292

Links

Other CCCH ZF,KH family RBPs
Other Zea mays RBPs

50 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Sb10g024330 Sorghum bicolor Sb10g024330 N 0.993
GRMZM2G151689 Zea mays GRMZM2G151689 N 0.966
LOC_Os06g41384 Oryza sativa LOC_Os06g41384 N 0.944
BRADI1G35920 Brachypodium distachyon BRADI1G35920 N 0.923
LOC_Os02g10080 Oryza sativa LOC_Os02g10080 N 0.896
BRADI3G06940 Brachypodium distachyon BRADI3G06940 N 0.888
BGIOSIBCE005985 Oryza indica BGIOSIBCE005985 N 0.887
BGIOSIBCE022629 Oryza indica BGIOSIBCE022629 N 0.873
PDK_20s1321721g007 Phoenix dactylifera PDK_20s1321721g007 N 0.835
SB04G006450 Sorghum bicolor Sb04g006450 N 0.831
LOC_Os04g57010 Oryza sativa LOC_Os04g57010 N 0.828
ppa009199m Prunus persica ppa009199m N 0.824
Cucsa.263980 Cucumis sativus Cucsa.263980 N 0.824
cassava23831.valid.m1 Manihot esculenta cassava23831.valid.m1 N 0.818
Cucsa.242740 Cucumis sativus Cucsa.242740 N 0.817
SB06G032000 Sorghum bicolor Sb06g032000 N 0.817
Glyma19g32910.1 Glycine max Glyma19g32910.1 N 0.817
Glyma03g30030.1 Glycine max Glyma03g30030.1 N 0.817
Glyma03g30020.1 Glycine max Glyma03g30020.1 N 0.817
chr1.LjT38A19.100.nc Lotus japonicus chr1.LjT38A19.100.nc N 0.817
Glyma02g29360.1 Glycine max Glyma02g29360.1 N 0.817
27843.m000162 Ricinus communis 27843.m000162 N 0.810
27843.m000161 Ricinus communis 27843.m000161 N 0.810
ppa009316m Prunus persica ppa009316m N 0.810
BRADI5G25340 Brachypodium distachyon BRADI5G25340 N 0.810
GRMZM2G071034 Zea mays GRMZM2G071034 N 0.810
Medtr7g111840 Medicago truncatula Medtr7g111840 N 0.810
Glyma20g39160.1 Glycine max Glyma20g39160.1 N 0.803
Glyma10g44330.1 Glycine max Glyma10g44330.1 N 0.803
B9GLM3_POPTR Populus trichocarpa POPTR_0001s05070 N 0.800
GRMZM2G124476 Zea mays GRMZM2G124476 N 0.793
MDP0000263392 Malus x domestica MDP0000263392 N 0.791
cassava36490.valid.m1 Manihot esculenta cassava36490.valid.m1 N 0.789
B9GYL2_POPTR Populus trichocarpa POPTR_0003s21780 N 0.783
MDP0000217837 Malus x domestica MDP0000217837 N 0.768
mgf003025m Mimulus guttatus mgf003025m N 0.754
BGIOSIBCE016974 Oryza indica BGIOSIBCE016974 N 0.746
GRMZM2G056920 Zea mays GRMZM2G056920 N 0.743
Cucsa.142970 Cucumis sativus Cucsa.142970 N 0.739
mgf010445m Mimulus guttatus mgf010445m N 0.739
cassava14774.m1 Manihot esculenta cassava14774.m1 N 0.739
POPTR_0016s04590 Populus trichocarpa POPTR_0016s04590 N 0.739
B9IHZ7_POPTR Populus trichocarpa POPTR_0016s04690 N 0.739
MDP0000176924 Malus x domestica MDP0000176924 N 0.718
MDP0000275117 Malus x domestica MDP0000275117 N 0.718
MDP0000202971 Malus x domestica MDP0000202971 N 0.718
MDP0000130160 Malus x domestica MDP0000130160 N 0.718
MDP0000120315 Malus x domestica MDP0000120315 N 0.718
mgf001428m Mimulus guttatus mgf001428m N 0.706