BGIOSIBCE026070 (Oryza indica)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		BGIOSIBCE026070 T00394_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
BGIOSIBCE026070 CCCH ZF 233 254
BGIOSIBCE026070 RRM 370 429

Links

Other CCCH ZF,RRM family RBPs
Other Oryza indica RBPs

73 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa023263m Prunus persica ppa023263m N 0.927
Glyma12g01340.1 Glycine max Glyma12g01340.1 N 0.915
Glyma09g35990.1 Glycine max Glyma09g35990.1 N 0.915
Glyma09g35980.1 Glycine max Glyma09g35980.1 N 0.915
fgenesh1_pm.C_scaffold_139000002 Selaginella moellendorfii fgenesh1_pm.C_scaffold_139000002 N 0.000
estExt_fgenesh2_pg.C_80472 Selaginella moellendorfii estExt_fgenesh2_pg.C_80472 N 0.702
e_gw1.31.137.1 Physcomitrella patens e_gw1.31.137.1 N 0.735
e_gw1.24.612.1 Selaginella moellendorfii e_gw1.24.612.1 N 0.714
e_gw1.136.54.1 Physcomitrella patens e_gw1.136.54.1 N 0.762
Glyma12g01350.1 Glycine max Glyma12g01350.1 N 0.915
mgf014647m Mimulus guttatus mgf014647m N 0.892
GRMZM2G044004 Zea mays GRMZM2G044004 N 0.819
ppa002413m Prunus persica ppa002413m N 0.867
MDP0000243086 Malus x domestica MDP0000243086 N 0.915
MDP0000220601 Malus x domestica MDP0000220601 N 0.867
MDP0000120462 Malus x domestica MDP0000120462 N 0.880
MDP0000120231 Malus x domestica MDP0000120231 N 0.880
LjT28K11.10.nd Lotus japonicus LjT28K11.10.nd N 0.892
GRMZM2G346113 Zea mays GRMZM2G346113 N 0.831
GRMZM2G311665 Zea mays GRMZM2G311665 N 1.000
Cucsa.166080 Cucumis sativus Cucsa.166080 N 0.890
cassava9561.m1 Manihot esculenta cassava9561.m1 N 0.902
cassava7294.valid.m1 Manihot esculenta cassava7294.valid.m1 N 0.902
POPTR_0001s05760 Populus trichocarpa POPTR_0001s05760 N 0.915
LOC_Os07g48410 Oryza sativa LOC_Os07g48410 N 1.000
LOC_Os03g21160 Oryza sativa LOC_Os03g21160 N 0.976
LOC_Os03g21140 Oryza sativa LOC_Os03g21140 N 0.964
GSVIVG00001467001 Vitis vinifera GSVIVG00001467001 N 0.915
BRADI4G44040 Brachypodium distachyon BRADI4G44040 N 0.878
BGIOSIBCE010970 Oryza indica BGIOSIBCE010970 N 0.976
B9GI27_POPTR Populus trichocarpa POPTR_0001s26250 N 0.867
B9GWA9_POPTR Populus trichocarpa POPTR_0003s20310 N 0.927
B9HNZ4_POPTR Populus trichocarpa POPTR_0009s05520 N 0.833
cassava7293.valid.m1 Manihot esculenta cassava7293.valid.m1 N 0.902
cassava7292.valid.m1 Manihot esculenta cassava7292.valid.m1 N 0.902
cassava30652.valid.m1 Manihot esculenta cassava30652.valid.m1 N 0.869
cassava30651.valid.m1 Manihot esculenta cassava30651.valid.m1 N 0.869
30169.m006471 Ricinus communis 30169.m006471 N 0.892
29223.m000023 Ricinus communis 29223.m000023 N 0.000
SB08G001980 Sorghum bicolor Sb08g001980 N 0.819
SB02G043180 Sorghum bicolor Sb02g043180 N 1.000
BGIOSIBCE010969 Oryza indica BGIOSIBCE010969 N 0.964