mgf014647m (Mimulus guttatus)
CCCH ZF,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH)
PF00076 (RRM_1) 		IPR000571
IPR000504 		mgf014647m T00995_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
mgf014647m CCCH ZF 189 211
mgf014647m RRM 266 325

Links

Other CCCH ZF,RRM family RBPs
Other Mimulus guttatus RBPs

69 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GRMZM2G311665 Zea mays GRMZM2G311665 N 0.892
BGIOSIBCE026070 Oryza indica BGIOSIBCE026070 N 0.892
LOC_Os03g21140 Oryza sativa LOC_Os03g21140 N 0.892
SB02G043180 Sorghum bicolor Sb02g043180 N 0.892
BGIOSIBCE010969 Oryza indica BGIOSIBCE010969 N 0.892
LOC_Os07g48410 Oryza sativa LOC_Os07g48410 N 0.892
BGIOSIBCE010970 Oryza indica BGIOSIBCE010970 N 0.880
POPTR_0001s05760 Populus trichocarpa POPTR_0001s05760 N 0.880
Cucsa.166080 Cucumis sativus Cucsa.166080 N 0.880
B9GWA9_POPTR Populus trichocarpa POPTR_0003s20310 N 0.880
ppa023263m Prunus persica ppa023263m N 0.880
LOC_Os03g21160 Oryza sativa LOC_Os03g21160 N 0.880
LjT28K11.10.nd Lotus japonicus LjT28K11.10.nd N 0.880
SB01G036490 Sorghum bicolor Sb01g036490 N 0.867
GRMZM2G086614 Zea mays GRMZM2G086614 N 0.867
Glyma12g01340.1 Glycine max Glyma12g01340.1 N 0.867
cassava7292.valid.m1 Manihot esculenta cassava7292.valid.m1 N 0.867
GRMZM2G003424 Zea mays GRMZM2G003424 N 0.867
GSVIVG00001467001 Vitis vinifera GSVIVG00001467001 N 0.867
cassava7293.valid.m1 Manihot esculenta cassava7293.valid.m1 N 0.867
Glyma09g35980.1 Glycine max Glyma09g35980.1 N 0.867
Glyma09g35990.1 Glycine max Glyma09g35990.1 N 0.867
MDP0000243086 Malus x domestica MDP0000243086 N 0.867
Glyma12g01350.1 Glycine max Glyma12g01350.1 N 0.867
cassava7294.valid.m1 Manihot esculenta cassava7294.valid.m1 N 0.867
cassava9561.m1 Manihot esculenta cassava9561.m1 N 0.867
BRADI4G44040 Brachypodium distachyon BRADI4G44040 N 0.855
B9GI27_POPTR Populus trichocarpa POPTR_0001s26250 N 0.855
MDP0000220601 Malus x domestica MDP0000220601 N 0.855
BRADI1G17510 Brachypodium distachyon BRADI1G17510 N 0.855
cassava30652.valid.m1 Manihot esculenta cassava30652.valid.m1 N 0.845
cassava30651.valid.m1 Manihot esculenta cassava30651.valid.m1 N 0.845
30169.m006471 Ricinus communis 30169.m006471 N 0.845
B9HNZ4_POPTR Populus trichocarpa POPTR_0009s05520 N 0.833
GRMZM2G368883 Zea mays GRMZM2G368883 N 0.833
MDP0000120231 Malus x domestica MDP0000120231 N 0.833
MDP0000259773 Malus x domestica MDP0000259773 N 0.831
GRMZM2G346113 Zea mays GRMZM2G346113 N 0.831
BRADI1G63570 Brachypodium distachyon BRADI1G63570 N 0.831
MDP0000256775 Malus x domestica MDP0000256775 N 0.831
GSVIVG00031538001 Vitis vinifera GSVIVG00031538001 N 0.821
ppa002413m Prunus persica ppa002413m N 0.821
MDP0000120462 Malus x domestica MDP0000120462 N 0.821
GRMZM2G044004 Zea mays GRMZM2G044004 N 0.819
SB08G001980 Sorghum bicolor Sb08g001980 N 0.819
SB05G001540 Sorghum bicolor Sb05g001540 N 0.819
Medtr4g118330 Medicago truncatula Medtr4g118330 N 0.819
cassava2158.valid.m1 Manihot esculenta cassava2158.valid.m1 N 0.816
Cucsa.333940 Cucumis sativus Cucsa.333940 N 0.779
XM_002877790.1 Arabidopsis lyrata fgenesh2_kg.5__1545__AT3G51950.1 N 0.770
AT3G51950 Arabidopsis thaliana AT3G51950-TAIR-G N 0.770
ppa002383m Prunus persica ppa002383m N 0.767
mgf002273m Mimulus guttatus mgf002273m N 0.765
chr2.CM0018.150.nc Lotus japonicus chr2.CM0018.150.nc N 0.756
30169.m006472 Ricinus communis 30169.m006472 N 0.756
Medtr5g008940 Medicago truncatula Medtr5g008940 N 0.747
mgf000973m Mimulus guttatus mgf000973m N 0.741
Glyma11g01780.1 Glycine max Glyma11g01780.1 N 0.736
Glyma01g43700.1 Glycine max Glyma01g43700.1 N 0.736
GRMZM2G132749 Zea mays GRMZM2G132749 N 0.735
MDP0000164538 Malus x domestica MDP0000164538 N 0.733
cassava2159.valid.m1 Manihot esculenta cassava2159.valid.m1 N 0.733
B9GI28_POPTR Populus trichocarpa POPTR_0001s26240 N 0.733
PK18074.1 Cannabis sativa PK18074.1 N 0.733
e_gw1.136.54.1 Physcomitrella patens e_gw1.136.54.1 N 0.726
XM_002313318.1 Populus trichocarpa POPTR_0009s05510 N 0.724
cassava34046.m1 Manihot esculenta cassava34046.m1 N 0.714
estExt_fgenesh2_pg.C_00420 Selaginella moellendorfii estExt_fgenesh2_pg.C_00420 N 0.714
estExt_fgenesh2_pg.C_80472 Selaginella moellendorfii estExt_fgenesh2_pg.C_80472 N 0.714